DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosbeta3 and Psma1

DIOPT Version :9

Sequence 1:NP_649858.1 Gene:Prosbeta3 / 41079 FlyBaseID:FBgn0026380 Length:205 Species:Drosophila melanogaster
Sequence 2:NP_058974.1 Gene:Psma1 / 29668 RGDID:61841 Length:263 Species:Rattus norvegicus


Alignment Length:135 Identity:32/135 - (23%)
Similarity:57/135 - (42%) Gaps:25/135 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 GGCVVAMRGKDCVAIATDHRFGIQAQT-ISTDFKKVFHIGPRMFLGLTGLQTDILTVRDRLMFRK 71
            |...|.::.|....:....|    ||: ::...||:.|:...:.:.:.||..|.     ||:...
  Rat    32 GSATVGLKSKTHAVLVALKR----AQSELAAHQKKILHVDNHIGISIAGLTADA-----RLLCNF 87

  Fly    72 NLYETRENREMC--PKPFSAMMS-----SFLYEHRFG--PYFIEPVVAGLDPKTMEPFICNMDLI 127
            ...|..::|.:.  |.|.|.::|     :.:...|:|  ||.:..::||.|  .|.|.:...   
  Rat    88 MRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYD--DMGPHVFQT--- 147

  Fly   128 GCPNA 132
             ||:|
  Rat   148 -CPSA 151

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosbeta3NP_649858.1 proteasome_beta_type_3 6..201 CDD:239728 32/135 (24%)
Psma1NP_058974.1 proteasome_alpha_type_1 6..216 CDD:239718 32/135 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 232..263
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0638
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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