DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosbeta3 and pas-1

DIOPT Version :9

Sequence 1:NP_649858.1 Gene:Prosbeta3 / 41079 FlyBaseID:FBgn0026380 Length:205 Species:Drosophila melanogaster
Sequence 2:NP_506571.1 Gene:pas-1 / 179941 WormBaseID:WBGene00003922 Length:246 Species:Caenorhabditis elegans


Alignment Length:124 Identity:28/124 - (22%)
Similarity:44/124 - (35%) Gaps:35/124 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 VAMRGKDCVAIATDHRFG---IQAQTISTDFKKVFHIGPRMFLGLTGLQTDILTVRDR------- 66
            ||::|.|...||...|..   |.|.|:::    |:.|...:.....|:..|......|       
 Worm    40 VAVKGADAAVIAVQKRVPDSLIVADTVTS----VYQISQSVGCCAIGMIPDAKFQIKRAQGEAAS 100

  Fly    67 ------------LMFRK----NLYETRENREMCPKPFSAMMSSFLYEHRFGP--YFIEP 107
                        |:.:|    |.|.| :|.||  :.....:....|:...||  |.::|
 Worm   101 WKYKNGYDMPCELLAKKMADLNQYYT-QNAEM--RSLGCALLFISYDDEKGPEVYRVDP 156

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosbeta3NP_649858.1 proteasome_beta_type_3 6..201 CDD:239728 28/124 (23%)
pas-1NP_506571.1 PRE1 7..245 CDD:223711 28/124 (23%)
proteasome_alpha_type_6 8..220 CDD:239723 28/124 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0638
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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