DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosbeta3 and pbs-3

DIOPT Version :9

Sequence 1:NP_649858.1 Gene:Prosbeta3 / 41079 FlyBaseID:FBgn0026380 Length:205 Species:Drosophila melanogaster
Sequence 2:NP_494913.1 Gene:pbs-3 / 173858 WormBaseID:WBGene00003949 Length:204 Species:Caenorhabditis elegans


Alignment Length:205 Identity:113/205 - (55%)
Similarity:147/205 - (71%) Gaps:1/205 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSILAYNGGCVVAMRGKDCVAIATDHRFGIQAQTISTDFKKVFHIGPRMFLGLTGLQTDILTVRD 65
            |||::|.||.||||.|.:||.||:|.|.|.|..||:||.|||..:..::::||.|.|:|..||.:
 Worm     1 MSIMSYTGGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVLE 65

  Fly    66 RLMFRKNLYETRENREMCPKPFSAMMSSFLYEHRFGPYFIEPVVAGLDPKTMEPFICNMDLIGCP 130
            ::||||||||.||||.:.|:..|.|:|:..|:||||.||.||:||||| .|.:|:||.||.|||.
 Worm    66 KIMFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLD-DTNKPYICCMDTIGCV 129

  Fly   131 NAPDDFVVAGTCAEQLYGMCETLWKPDLEPDQLFEVIAQSIVNAFDRDAMSGWGATVYIIEKDKI 195
            :||.|||..||..|.|.|:||..|:.:::||:|||..||||::..:|||.|||||.||.|.|||:
 Worm   130 SAPRDFVAVGTGQEYLLGVCENFWRENMKPDELFEATAQSILSCLERDAASGWGAVVYTITKDKV 194

  Fly   196 TERTLKTRMD 205
            ...|:|.|||
 Worm   195 NVSTIKARMD 204

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosbeta3NP_649858.1 proteasome_beta_type_3 6..201 CDD:239728 106/194 (55%)
pbs-3NP_494913.1 PRE1 3..193 CDD:223711 104/190 (55%)
proteasome_beta_type_3 6..200 CDD:239728 106/194 (55%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160156082
Domainoid 1 1.000 209 1.000 Domainoid score I1659
eggNOG 1 0.900 - - E1_COG0638
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2089
Inparanoid 1 1.050 235 1.000 Inparanoid score I2152
Isobase 1 0.950 - 0 Normalized mean entropy S357
OMA 1 1.010 - - QHG53924
OrthoDB 1 1.010 - - D1170036at2759
OrthoFinder 1 1.000 - - FOG0003566
OrthoInspector 1 1.000 - - oto18553
orthoMCL 1 0.900 - - OOG6_101970
Panther 1 1.100 - - LDO PTHR11599
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1011
SonicParanoid 1 1.000 - - X2440
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1716.790

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