DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosbeta3 and pas-4

DIOPT Version :10

Sequence 1:NP_649858.1 Gene:Prosbeta3 / 41079 FlyBaseID:FBgn0026380 Length:205 Species:Drosophila melanogaster
Sequence 2:NP_492360.1 Gene:pas-4 / 172679 WormBaseID:WBGene00003925 Length:253 Species:Caenorhabditis elegans


Alignment Length:116 Identity:30/116 - (25%)
Similarity:48/116 - (41%) Gaps:17/116 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 GGCVVAMRGKDCVAIATDHRFGIQAQTISTDFKKVFHIGPRMFLGLTGLQTDILTVRDRLMFRKN 72
            |...|.:|||||:.|..:.: .|.|.......:|:..|...:.|...||..|...:.||......
 Worm    30 GSTAVGVRGKDCIVIGVEKK-SIPALQDDRTIRKIHMIDDHVMLAFAGLSADARVLVDRARIECQ 93

  Fly    73 LYE-TRENREMCPKPFS-AMMSSFL--YEHRF------GPYFIEPVVAGLD 113
            .|: |.|:      |.: |.:|.::  .:.||      .|:.|..::.|.|
 Worm    94 SYKLTLED------PVTVAYISRYIANTKQRFTQSPGRRPFGISMLIGGFD 138

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosbeta3NP_649858.1 proteasome_beta_type_3 6..201 CDD:239728 30/116 (26%)
pas-4NP_492360.1 proteasome_alpha_type_7 4..212 CDD:239724 30/116 (26%)

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