DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11977 and vap-1

DIOPT Version :9

Sequence 1:NP_649855.3 Gene:CG11977 / 41076 FlyBaseID:FBgn0037650 Length:274 Species:Drosophila melanogaster
Sequence 2:NP_001024553.1 Gene:vap-1 / 181768 WormBaseID:WBGene00006886 Length:424 Species:Caenorhabditis elegans


Alignment Length:146 Identity:32/146 - (21%)
Similarity:49/146 - (33%) Gaps:18/146 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 NNFRRKLEWGL-----GNLPRAVKFKNIKWDDELSVMAMRVSNQCLQ--HTFSPCVNTFLYKDVG 146
            |:.||.:..||     |.|........:.||.|:...|...::.|..  .||.|.........:|
 Worm    41 NDARRSMAKGLEPNKCGLLSGGKNVYELNWDCEMEAKAQEWADGCPSSFQTFDPTWGQNYATYMG 105

  Fly   147 ESSDFVKVQNTSKGFNVISFLNMWFEYHKMMKPSYVNNFPNIAPQDRLIIFANLIYEKNKKMGCG 211
            ..:|  .:...|...|     ..|.|...:......|.:.|.|    :..|||:...|....||.
 Worm   106 SIAD--PLPYASMAVN-----GWWSEIRTVGLTDPDNKYTNSA----MFRFANMANGKASAFGCA 159

  Fly   212 MVKSGQGRFLTCLFDK 227
            .........:.|:::|
 Worm   160 YALCAGKLSINCIYNK 175

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11977NP_649855.3 SCP_euk 81..226 CDD:240180 31/143 (22%)
vap-1NP_001024553.1 SCP 31..175 CDD:214553 31/144 (22%)
SCP 234..386 CDD:214553
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1528782at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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