DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11975 and Atg18b

DIOPT Version :10

Sequence 1:NP_649853.1 Gene:CG11975 / 41074 FlyBaseID:FBgn0037648 Length:340 Species:Drosophila melanogaster
Sequence 2:NP_610100.1 Gene:Atg18b / 35396 FlyBaseID:FBgn0032935 Length:471 Species:Drosophila melanogaster


Alignment Length:388 Identity:97/388 - (25%)
Similarity:163/388 - (42%) Gaps:77/388 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 FNQDQGCFACATDTGFRVYNCDPLKEKERQYFPEGGLSH---VEMLFRCNYLALVGGGIRPLYPP 79
            ||||....:..:.||.|:::... ::|..:.|.:.....   ||.||..:.:.||     ....|
  Fly     8 FNQDFTSLSVLSPTGLRLFSISS-QDKVEEIFAKDNTEQIRIVERLFNSSLVVLV-----TAQKP 66

  Fly    80 NKVIVWDDLKKSPAISLDFNQPVRAVRLRRDRIVVVLEGVIKVFTFTQQPQQLHVFET-SSNPNG 143
            |.:.:....||....:..:...:..||:.|.|::|.|...|.:... :..:.||..|. :.|..|
  Fly    67 NCLKMLHFKKKQDICNCFYPSEILCVRMNRQRLIVCLAESIHIHDI-RDMKILHSIENIAPNEQG 130

  Fly   144 LCVLCPHSNKSLLAFPGRRT-GHVQIVDLANTERAPLEVIAHEAGISCIALNLQGTRLATAGEKG 207
            ||.|   |..|.||||..:| |.::|.: |:..|..:.:.||:..:|.:|.:..|..||||.|:|
  Fly   131 LCAL---SLNSHLAFPVCQTSGELRIFN-ASKLRTGMTIRAHDTSLSALAFSPSGALLATASERG 191

  Fly   208 TLIRIFDTESGKKVSELRRGSNHANIFCINFNHQSTMVVVASDHGTIHVFNLE------------ 260
            |:||:|..::|::|.|.|||.:...|..:.|:.....:..:|:..|:|||.::            
  Fly   192 TVIRVFCVKNGQRVQEFRRGVSCVRIASLVFSASGDFLCASSNTETVHVFKIDTRAVETVELKAI 256

  Fly   261 -------DNKPRE-------------------------SSLPI---IPKYFSSQWSFVKFSIPQG 290
                   :|..:|                         |||.:   :.:..:...||....:.||
  Fly   257 ADVAAKSENSAKEAVASTAAEESCRPVASWGGMFSKAVSSLLLPTQVSEVLAQDRSFATVQLAQG 321

  Fly   291 P-RCVCAF---GADPNSVVAICADGHYY--KFLFNNKGECS-------RDICTQFLELQDDET 340
            . :.:||.   ..:|..::| |.||..|  :|.....|.|.       |......:||:..|:
  Fly   322 GLKHICALTRVQKEPRLLIA-CEDGFLYVHEFPAERGGPCKLMSVHDLRGALEDVIELELSES 383

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11975NP_649853.1 WD40 <70..>265 CDD:441893 59/215 (27%)
WD40 repeat 102..136 CDD:293791 9/33 (27%)
WD40 repeat 145..180 CDD:293791 13/35 (37%)
WD40 repeat 188..225 CDD:293791 16/36 (44%)
WD40 repeat 233..273 CDD:293791 12/86 (14%)
Atg18bNP_610100.1 WD40 repeat 79..122 CDD:293791 9/43 (21%)
WD40 repeat 130..166 CDD:293791 15/39 (38%)
WD40 <149..>251 CDD:441893 32/102 (31%)
WD40 repeat 172..208 CDD:293791 15/35 (43%)
WD40 repeat 212..257 CDD:293791 7/44 (16%)

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