DRSC/TRiP Functional Genomics Resources

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Protein Alignment E(var)3-9 and LOC563292

DIOPT Version :10

Sequence 1:NP_649852.2 Gene:E(var)3-9 / 41073 FlyBaseID:FBgn0260243 Length:588 Species:Drosophila melanogaster
Sequence 2:XP_691749.6 Gene:LOC563292 / 563292 -ID:- Length:749 Species:Danio rerio


Alignment Length:342 Identity:80/342 - (23%)
Similarity:124/342 - (36%) Gaps:90/342 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   239 AAPLPPPLYSPVVCCKLCFYESPDQDAHMEHMRRTHLLKDWE--CHICGKKFTNAQESRIKFHIK 301
            |:||||...:....||.|.||:.:|.....|:...| .|.:.  |..|||.|.:..|  :|.|::
Zfish   424 ASPLPPATANKTHKCKFCDYETAEQGLLNRHLLAVH-SKSFPHICVECGKGFRHPSE--LKKHMR 485

  Fly   302 YHKLQRHVKCPVCGFICSSKETLKEHKQAVHVRT---KCTYCGKT-------VKNATLH------ 350
            .|..::...|..|.:..:....||.|.:..|.|.   :|..||:|       .::||.|      
Zfish   486 THTGEKPYSCMYCDYKSADSSNLKTHVKTKHSRELPFRCERCGQTFAEEEELTQHATTHDDARGH 550

  Fly   351 ------------AHLKKHL-----------------------EEGEAELAQQLKKLEQL------ 374
                        :.||:|:                       |..:...:.:.||:.|.      
Zfish   551 QCSHCDHRSSNSSDLKRHIISVHTKDYPHKCAVCAKGFHRPSELKKHSASHKAKKMHQCRHCNFK 615

  Fly   375 ---PVNLQSQHLSSLESSVAEVTTASEGSNIPGESTVPEDSNVTENSSVPSIETSNHADIQCPMG 436
               |..| |:|:.|:.:...:.|...:....|   |.|:.:..||.|..|. .|...|.:..|..
Zfish   616 ISDPFVL-SRHILSVHTKEPQQTAQQQQQTPP---TSPQQAPPTEKSPAPK-RTIGAAQLAAPAV 675

  Fly   437 PPANGEVPDVADVASPSTEPTESVTKCSYCSDTFEKAQQLQAHVLATHTQTRK----------RR 491
            ..|.|        |....|  ..|.:|.||..:...|...:.||::.||:...          ||
Zfish   676 KKAGG--------AKGQRE--RRVYQCQYCDYSTGDASGFKRHVISIHTKDYPHRCQYCSKGFRR 730

  Fly   492 RSSDNQSLVRKTTQEIP 508
            .|..||.::|.....:|
Zfish   731 PSEKNQHIMRHHKDMVP 747

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
E(var)3-9NP_649852.2 zf-AD 18..102 CDD:462262
zf-C2H2_2 253..>334 CDD:463690 24/82 (29%)
C2H2 Zn finger 253..274 CDD:275368 7/20 (35%)
C2H2 Zn finger 281..303 CDD:275368 8/21 (38%)
PHA00732 310..>358 CDD:177300 17/98 (17%)
C2H2 Zn finger 311..332 CDD:275368 5/20 (25%)
C2H2 Zn finger 337..356 CDD:275368 9/43 (21%)
LOC563292XP_691749.6 Zfx_Zfy_act 42..313 CDD:461400
ROS_MUCR <330..>360 CDD:473244
C2H2 Zn finger 330..350 CDD:275368
C2H2 Zn finger 362..382 CDD:275368
C2H2 Zn finger 392..412 CDD:275368
C2H2 Zn finger 438..459 CDD:275368 7/20 (35%)
COG5048 463..>518 CDD:227381 15/56 (27%)
C2H2 Zn finger 467..487 CDD:275368 8/21 (38%)
zf-H2C2_2 479..503 CDD:463886 6/25 (24%)
C2H2 Zn finger 495..516 CDD:275368 5/20 (25%)
C2H2 Zn finger 524..544 CDD:275368 6/19 (32%)
C2H2 Zn finger 552..573 CDD:275368 3/20 (15%)
C2H2 Zn finger 581..601 CDD:275368 1/19 (5%)
C2H2 Zn finger 609..626 CDD:275368 3/17 (18%)
C2H2 Zn finger 692..713 CDD:275370 6/20 (30%)
C2H2 Zn finger 721..741 CDD:275370 5/19 (26%)
Blue background indicates that the domain is not in the aligned region.

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