DRSC/TRiP Functional Genomics Resources

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Protein Alignment E(var)3-9 and znf1007

DIOPT Version :9

Sequence 1:NP_649852.2 Gene:E(var)3-9 / 41073 FlyBaseID:FBgn0260243 Length:588 Species:Drosophila melanogaster
Sequence 2:XP_001921925.4 Gene:znf1007 / 553302 ZFINID:ZDB-GENE-131120-139 Length:2186 Species:Danio rerio


Alignment Length:579 Identity:123/579 - (21%)
Similarity:200/579 - (34%) Gaps:185/579 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 LIKFKRSCVETQE--QFGELEYQREHNGIVIKREIEPEEEKFCGFIYLDTDEEDNS---DEDGSR 144
            |||.:...:.|:|  :..:.:.:.|.:.||:|.|.:.:..||...:.|:|..||||   .|.|.|
Zfish     3 LIKEESEDMMTEETLEIKQEDAEEEADLIVMKLEDDEKSMKFDHQVGLETHIEDNSHICSECGER 67

  Fly   145 RVCAVFDI-----PHVPIKEEHMARVPLQNSDKFQPPEPKNFASPVDSRFDMIDNDALTSGMLGP 204
                 |::     .|:.|....|....||....|          ..::||.  .:.::.|| :.|
Zfish    68 -----FELKESLDAHMNIHSRAMPYTCLQCGKSF----------TTEARFH--THLSIHSG-IKP 114

  Fly   205 SIEDLSGTVDDGTEDEEEEEEEIVRFTYDDDNDAAAPLPPPLYSPVVC--CKLCFYESPDQDAHM 267
            ......|   .|..:....:..:.|....:             .|..|  |..||..|....||:
Zfish   115 FTCQYCG---KGFRNGRCFKLHLKRMHARE-------------KPYACQYCGTCFNTSKKLKAHV 163

  Fly   268 ------------------------EHMR-----------------------RTHLL-----KDWE 280
                                    :|||                       :.|::     |.:.
Zfish   164 KTHPEMKTCACELCGKRLSRKSLKKHMRIHTGEKPYSCSYCGMSFSFKTSLKNHIVNHTGEKPYS 228

  Fly   281 CHICGKKFTNAQESRIKFHIKYHKLQRHVKCPVCGFICSSKETLKEHKQAVHVRTK---CTYCGK 342
            |.||||.|  .::.|:|.|:..|..:|...|..||....|:..::.|.: .|...|   |:.||:
Zfish   229 CSICGKSF--IEQGRLKIHMISHSNERPYSCSQCGKSFKSQRCVRLHMK-THTNKKPHSCSQCGR 290

  Fly   343 TV-KNATLHAHLKKHLEE--------GEAELAQQLKKLEQLPVNLQSQHLSSLESSVAEVTTASE 398
            :. |...|:||:|.|.:|        |:..::|     .:|.|:::. |.:......:|.     
Zfish   291 SFNKLGDLNAHIKAHSDERPYSCSKCGKGFISQ-----TRLNVHMKF-HTAEKPFFCSEC----- 344

  Fly   399 GSNIPGESTVPEDSNVTENSSVPSIETSNHADIQCPMGPPANGEVPDVADVASPSTEPTESVTKC 463
            |.|...:..|                 :.|..|                       ...|....|
Zfish   345 GRNFKTQDCV-----------------NRHMHI-----------------------HTVEKPYSC 369

  Fly   464 SYCSDTFEKAQQLQAHVLATHTQTRKRRRSSDNQSLVRKTTQEIPTSPIAKITKKQTIESKERVV 528
            |.|..:|.....|.||:: ||   ||.|..|.:|              ..|..|.|..... .:.
Zfish   370 STCGKSFILQSHLNAHMI-TH---RKERPYSCSQ--------------CGKSFKSQRYVGM-HMK 415

  Fly   529 LESSSQLDSTAQQESRTSATSNDSSPVQ-QVPEKAYISCYICGRSFDLKIKLNRHLKQH 586
            :.:..:|.|.:|:|.......:...|:| ...||:| :|..||:|:..:..:.||:|.|
Zfish   416 IHTGKKLSSRSQREKAFINQESLDKPMQTHCDEKSY-ACSQCGKSYKSQKYVKRHMKIH 473

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
E(var)3-9NP_649852.2 zf-AD 18..102 CDD:285071 5/18 (28%)
zf-C2H2_2 253..>334 CDD:289522 28/132 (21%)
C2H2 Zn finger 253..274 CDD:275368 9/67 (13%)
C2H2 Zn finger 281..303 CDD:275368 9/21 (43%)
PHA00732 310..>358 CDD:177300 16/51 (31%)
C2H2 Zn finger 311..332 CDD:275368 5/20 (25%)
C2H2 Zn finger 337..356 CDD:275368 8/19 (42%)
znf1007XP_001921925.4 C2H2 Zn finger 61..81 CDD:275368 5/24 (21%)
C2H2 Zn finger 89..109 CDD:275368 5/31 (16%)
C2H2 Zn finger 117..138 CDD:275368 3/23 (13%)
COG5048 142..525 CDD:227381 87/406 (21%)
C2H2 Zn finger 146..166 CDD:275368 7/19 (37%)
C2H2 Zn finger 174..193 CDD:275368 3/18 (17%)
zf-H2C2_2 185..209 CDD:290200 3/23 (13%)
C2H2 Zn finger 201..221 CDD:275368 1/19 (5%)
C2H2 Zn finger 229..249 CDD:275368 9/21 (43%)
C2H2 Zn finger 257..277 CDD:275368 5/20 (25%)
C2H2 Zn finger 285..305 CDD:275368 8/19 (42%)
C2H2 Zn finger 313..333 CDD:275368 4/25 (16%)
C2H2 Zn finger 341..361 CDD:275368 6/64 (9%)
C2H2 Zn finger 369..389 CDD:275368 7/20 (35%)
C2H2 Zn finger 397..417 CDD:275368 4/34 (12%)
C2H2 Zn finger 453..473 CDD:275368 7/19 (37%)
C2H2 Zn finger 481..501 CDD:275368
COG5048 504..953 CDD:227381
C2H2 Zn finger 509..529 CDD:275368
C2H2 Zn finger 537..557 CDD:275368
C2H2 Zn finger 574..594 CDD:275368
C2H2 Zn finger 611..631 CDD:275368
C2H2 Zn finger 639..659 CDD:275368
C2H2 Zn finger 676..696 CDD:275368
C2H2 Zn finger 704..724 CDD:275368
C2H2 Zn finger 741..761 CDD:275368
C2H2 Zn finger 769..790 CDD:275368
C2H2 Zn finger 807..827 CDD:275368
C2H2 Zn finger 836..855 CDD:275368
C2H2 Zn finger 876..892 CDD:275368
C2H2 Zn finger 900..920 CDD:275368
COG5048 933..1410 CDD:227381
C2H2 Zn finger 937..957 CDD:275368
C2H2 Zn finger 965..985 CDD:275368
C2H2 Zn finger 1002..1022 CDD:275368
C2H2 Zn finger 1030..1051 CDD:275368
C2H2 Zn finger 1068..1088 CDD:275368
C2H2 Zn finger 1096..1116 CDD:275368
C2H2 Zn finger 1133..1153 CDD:275368
C2H2 Zn finger 1170..1190 CDD:275368
C2H2 Zn finger 1211..1227 CDD:275368
C2H2 Zn finger 1235..1255 CDD:275368
C2H2 Zn finger 1272..1292 CDD:275368
C2H2 Zn finger 1300..1320 CDD:275368
C2H2 Zn finger 1337..1357 CDD:275368
C2H2 Zn finger 1378..1394 CDD:275368
C2H2 Zn finger 1402..1422 CDD:275368
COG5048 1435..1830 CDD:227381
C2H2 Zn finger 1439..1459 CDD:275368
C2H2 Zn finger 1467..1487 CDD:275368
C2H2 Zn finger 1504..1524 CDD:275368
C2H2 Zn finger 1532..1552 CDD:275368
C2H2 Zn finger 1569..1589 CDD:275368
C2H2 Zn finger 1597..1617 CDD:275368
C2H2 Zn finger 1634..1654 CDD:275368
C2H2 Zn finger 1671..1691 CDD:275368
C2H2 Zn finger 1708..1728 CDD:275368
C2H2 Zn finger 1736..1756 CDD:275368
COG5048 1769..2180 CDD:227381
C2H2 Zn finger 1773..1793 CDD:275368
C2H2 Zn finger 1801..1821 CDD:275368
C2H2 Zn finger 1838..1858 CDD:275368
C2H2 Zn finger 1875..1895 CDD:275368
C2H2 Zn finger 1912..1932 CDD:275368
C2H2 Zn finger 1940..1961 CDD:275368
C2H2 Zn finger 1969..1989 CDD:275368
C2H2 Zn finger 1997..2016 CDD:275368
zf-H2C2_2 2008..2033 CDD:290200
C2H2 Zn finger 2024..2044 CDD:275368
C2H2 Zn finger 2052..2071 CDD:275368
C2H2 Zn finger 2080..2100 CDD:275368
C2H2 Zn finger 2112..2128 CDD:275368
C2H2 Zn finger 2136..2156 CDD:275368
C2H2 Zn finger 2164..2184 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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