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Protein Alignment E(var)3-9 and Zfp287

DIOPT Version :9

Sequence 1:	NP_649852.2	Gene:	E(var)3-9 / 41073	FlyBaseID:	FBgn0260243	Length:	588	Species:	Drosophila melanogaster
Sequence 2:	NP_001100478.1	Gene:	Zfp287 / 303212	RGDID:	1308617	Length:	762	Species:	Rattus norvegicus

Alignment Length:	661	Identity:	124/661 - (18%)
Similarity:	216/661 - (32%)	Gaps:	210/661 - (31%)

- Green bases have known domain annotations that are detailed below.

  Fly    26 TMGMDMDQAIVKPIFGSDDAAVADMAEILEQMNDWNIKVAREDGRPQYMCIAC--IAEFHRL--- 85
            ::|:.:.:..|.||.......:.::.|  ....:|..|..           ||  :.:|.:|
  Rat   206 SLGLTVYRPTVIPILEEPWMVIKEIVE--GPSPEWETKAQ-----------ACSPLKDFPKLKQD 257

  Fly    86 ----IKFKRSC-----VETQEQFGELEYQREHNGIVIKREI---EPEEEKFCGF-IYLDTDEEDN 137
                ||.:.||     :|.|..:...:...:.:...:|.|:   :|.||....: :|.|..|:..
  Rat   258 GTQTIKLEESCDCEDGLERQPAYAFRKIHIDEDDFSLKSELSQEDPTEECLSKYDLYRDNFEKHT 322

  Fly   138 SDEDGSRRVCAVFDIPHVPIKEEHMARVPLQNSDKFQPPEPKNFASPVDSRFDMIDNDALTSGML 202
            :       :...||       .:..::..|.|..|              ..|..:.:..:..|.:
  Rat   323 N-------LIIQFD-------TQSDSKTLLYNESK--------------PTFTNVSSGGVVHGKI 359

  Fly   203 GPSIEDLSGTV---------------DDGTEDEEEEEEEIVR-FTYDDDNDAAAPLPPPLYSPVV 251
            .|..:..|..|               ::..:|:..|.||..: |.:             |.|.:.
  Rat   360 LPGDKPYSCNVCGKKFRKYPSLLAHRNNHAKDKSYECEECGKEFKH-------------LSSLIA 411

  Fly   252 CCKLCFYESP----------DQDAHMEHMRRTHL-LKDWECHICGKKFTNAQESRIKFHIKYHKL 305
            ..::...|.|          .|.||:...:|.|. .|.::|:.|||.|  :|.:.:..|.:.|..
  Rat   412 HQRMHTGEKPYECHQCGKAFSQRAHLTIHQRIHTGEKPYKCNDCGKDF--SQRAHLTIHQRTHTG 474

  Fly   306 QRHVKCPVCGFICSSKETLKEHKQAVHVRTK---CTYCGKTVKNAT-LHAHLKKHLEEGEAELAQ 366
            ::..||..|....|...:|..| |.||...|   |..||||...:| |..|.|.|..:...:..:
  Rat   475 EKPYKCLECSKTFSHSSSLINH-QRVHTGEKPYICNECGKTFSQSTHLLQHQKIHTGKKPYKCNE 538

  Fly   367 QLKKLEQLPVNLQSQHLSSLE---------------SSVAEVTTASEGS-----NIPGESTVPED 411
            ..|...|....::.|.:.|.|               |::.:..|...|.     |:.|:: ..:.
  Rat   539 CWKVFSQSTYLIRHQRIHSGEKCYKCTECGKAFAHSSTLIQHQTTHTGEKSYICNVCGKA-FSQS 602

  Fly   412 SNVTENSSV-----------------PSIETSNHADIQCPMGPPANGEVPDVADVASPSTEPTES 459
            :|:|::...                 .|:..:.|..|.       |||.|...:....:.....:
  Rat   603 ANLTQHHRTHTGEKPYKCSVCGKAFSQSVHLTQHQRIH-------NGEKPFKCNTCGKAYRQGAN 660

  Fly   460 VT------------KCSYCSDTFEKAQQLQAHVLATHTQTRKRRRSSDNQSLVRKTTQEIPTSPI 512
            :|            ||.:|...|..:..|..| ..|||..|..:.:..|:...::|.
  Rat   661 LTQHQRVHTGEKPYKCHHCGKAFIYSSSLNQH-RRTHTGERPYKCTHCNKDFSQRTC-------- 716

  Fly   513 AKITKKQTIESKERVVLESSSQLDSTAQQESRTSATSNDSSPVQQVPEKAYISCYICGRSFDLKI 577
              :.:.|.|.:.||.                                    ..|.|||:||....
  Rat   717 --LIQHQRIHTGERP------------------------------------YGCRICGKSFTQST 743

  Fly   578 KLNRHLKQHKG 588
            .|.:|.:.|.|
  Rat   744 NLIQHQRVHMG 754

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.