DRSC/TRiP Functional Genomics Resources

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Protein Alignment E(var)3-9 and mld

DIOPT Version :10

Sequence 1:NP_649852.2 Gene:E(var)3-9 / 41073 FlyBaseID:FBgn0260243 Length:588 Species:Drosophila melanogaster
Sequence 2:NP_001247289.1 Gene:mld / 2768685 FlyBaseID:FBgn0263490 Length:1965 Species:Drosophila melanogaster


Alignment Length:640 Identity:123/640 - (19%)
Similarity:237/640 - (37%) Gaps:161/640 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 GMDMDQAIVKPIFGSDDAAVADMAEILEQMNDWNIKVAREDGRPQYMCIACIAEFHRLIKFKRSC 92
            |...|.|:...:.|    |.:.|..:||:|..|.:.:.|:||.||.:|..|:|:|..:.||:|.|
  Fly   186 GRSSDNAVDYTLSG----AHSSMDIVLEEMTIWMLNINRDDGLPQEICRQCMAQFLMVAKFRRKC 246

  Fly    93 VETQEQFGEL--EYQREHNGIVIKREIEPEEEKFCGFIYLD-TDEEDN---------SDEDG--- 142
            |..|::..:.  |..........||:.:.:::....::.|: |..|:.         |:.||   
  Fly   247 VRMQQRLQDFAQEISDRQTARQAKRQQKVQKKTHDRWLQLEPTSHEEQQPIRKRRMVSESDGDST 311

  Fly   143 ----------------SRRVCAVFDI--PHVPIKEEHMARV--PLQNSDKFQPPEPKNFASPVD- 186
                            :::|...|:.  |..|..::|..|.  .|....:.:.|.....||.:. 
  Fly   312 AAAAAAEAATATATTPAKQVRTDFESLPPPKPSPQQHRVRKYRTLSIDCEMERPAASINASSMPW 376

  Fly   187 ----SRFDMIDN--DALTSGMLGPS-----------IEDLSGTVDDGTEDEEEEEEEIVRFTYDD 234
                :|.::.:|  .:.::.::.|:           :.|||.....|.|.:....        ..
  Fly   377 KTKAARKELSENWASSCSTAVMSPNRQRSSTSSSEHMSDLSVGPCCGFESDSNPS--------ST 433

  Fly   235 DNDAAAPLPPPLYSPVVCCKLCFYESPDQDAHMEHM--RRTHLLKDWECHICGKKFTNAQESRIK 297
            .|.|.        ..|:..|   .:||::.:.|..:  ||....:....::..|:   .:.|.::
  Fly   434 SNSAR--------RTVILVK---QQSPEKTSPMYDLMPRRGRRPRKAPIYMPAKR---QRRSLVR 484

  Fly   298 FHIKYHKLQRHVKCPVCGFICSSKETLKEHKQAVH--------VRTKCTYCGKTVKNATLHAH-- 352
            ....|.|.|     ||      ::|..|..::.::        :...|.....:..:|.:...  
  Fly   485 KEPLYRKAQ-----PV------NEENKKSDQKDIYPKESRMEGLAPSCDEAIDSTSDAPMEVASN 538

  Fly   353 -LKKHLEE----GEAELAQQLKKLEQLPVN---------------LQSQHLSSLESSVAEVTTAS 397
             ::|..:|    |..:...||..:|..|||               :|:...::.|..:.|.|:..
  Fly   539 VVQKKCDEICLNGLIDSRNQLGAMEMEPVNEMIASNGVDKELTLSVQNNKETTSEEQIFEATSVI 603

  Fly   398 EGSNIPGESTVPEDSNV-TENSSVPSIETSNHADIQCPMGPPANGEVPDVADVASPSTEPTESVT 461
            :.|..|.:|.  ||..| ||..|:.:       ||:      |..::....::.| |||.:||..
  Fly   604 KESVQPEQSA--EDIQVRTEIESIAN-------DIR------AEADLVQSEELTS-STETSESQP 652

  Fly   462 KCSYCSDTFEK------AQQLQAHVLATHTQTRKRRRSSDNQSLV---------RKTTQEIPTSP 511
            |.....::..|      .|.::||.....|||.....|:|.:.::         ....:.:...|
  Fly   653 KAVEQLESMGKQESYALPQNMEAHESVQQTQTVDESDSADQREIIVSIPLEVLDENLQRRLCVDP 717

  Fly   512 IAKITKKQTIESKERVVL-------ESSSQLDSTAQQESRTSATSNDSSPVQQVP 559
            ..:...:|:.:.||..:.       |:......:|..:|..||.:..::.::..|
  Fly   718 ETEAANRQSADPKEFALRPDDVNNNENDENFCQSATADSFNSAVALRTNKIEATP 772

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
E(var)3-9NP_649852.2 zf-AD 18..102 CDD:462262 25/73 (34%)
zf-C2H2_2 253..>334 CDD:463690 15/90 (17%)
C2H2 Zn finger 253..274 CDD:275368 6/22 (27%)
C2H2 Zn finger 281..303 CDD:275368 2/21 (10%)
PHA00732 310..>358 CDD:177300 7/58 (12%)
C2H2 Zn finger 311..332 CDD:275368 4/20 (20%)
C2H2 Zn finger 337..356 CDD:275368 2/21 (10%)
mldNP_001247289.1 zf-AD 186..255 CDD:214871 25/72 (35%)
PAT1 <959..>1109 CDD:401645
C2H2 Zn finger 1365..1388 CDD:275368
C2H2 Zn finger 1396..1416 CDD:275368
C2H2 Zn finger 1424..1445 CDD:275368
C2H2 Zn finger 1725..1746 CDD:275368
C2H2 Zn finger 1756..1776 CDD:275368
C2H2 Zn finger 1785..1806 CDD:275368
zf-C2H2 1812..1834 CDD:395048
C2H2 Zn finger 1814..1834 CDD:275368
zf-C2H2 1839..1861 CDD:395048
C2H2 Zn finger 1841..1861 CDD:275368
zf-C2H2 1866..1888 CDD:395048
C2H2 Zn finger 1868..1888 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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