DRSC/TRiP Functional Genomics Resources

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Protein Alignment E(var)3-9 and Zfp407

DIOPT Version :10

Sequence 1:NP_649852.2 Gene:E(var)3-9 / 41073 FlyBaseID:FBgn0260243 Length:588 Species:Drosophila melanogaster
Sequence 2:NP_001028513.2 Gene:Zfp407 / 240476 MGIID:2685179 Length:2246 Species:Mus musculus


Alignment Length:672 Identity:127/672 - (18%)
Similarity:197/672 - (29%) Gaps:252/672 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 DMAEILEQMNDWNIKVAREDGRP-QYMCIACIAEFHRLIKFKRSCVETQEQFGELE-----YQRE 107
            :..:|.....|:.:.|.:..||. |:.|              ::|..:.....:||     .|.:
Mouse   526 ECGQIAANKTDFEVHVKQCHGREMQFHC--------------QTCDFSSPSRRDLEEHVHSNQHQ 576

  Fly   108 HNGIVIKREIEPEEEKFCGFIYL-DTDEEDNSDEDGSR----RVCAVF----DIPHVPIKEEHMA 163
            |...|:..:.       |.||.| :|...|:..|....    ..|.:|    |:      |||.|
Mouse   577 HMTPVLSCQC-------CSFISLNETGLRDHMKEKHGMGFFCTSCNLFLSEKDV------EEHRA 628

  Fly   164 RVPLQNSDKFQPPEPKNFA-------------SPVDSRFDMIDNDALTSGMLGPSIEDLSGTVDD 215
             ....||...||....:.:             :|.|||     .|:..:...||:    ......
Mouse   629 -TESHNSLVVQPKTASSLSGDSVLPFSTVESENPADSR-----EDSGKAAQEGPA----ESRASH 683

  Fly   216 GTEDEEEEEEEIVRFTYDDDNDAAAPLPPPLYSPVVCCKLCFYESPD-------------QDAHM 267
            |||.....:                        |...||.|||::..             ||.|.
Mouse   684 GTEARHSSK------------------------PQFQCKKCFYKTRSSTVLTRHIKLRHGQDYHF 724

  Fly   268 ----------------EHMRRT-HL---------LKDWEC--HICGKKFTNAQES------RIKF 298
                            :|::|: ||         |...||  .:|.......:||      |.:.
Mouse   725 LCKACNLYSLSKEGMEKHIKRSKHLENAKKNNIGLSFEECIERVCIGANDKKEESSVSGSGRPEG 789

  Fly   299 HIKYHKLQRHVK-----------------------------------------CPVCGFICSSKE 322
            |:.... |.|.:                                         |..||.:.||..
Mouse   790 HVGVQS-QEHSQREQSMLTPKELPQSGVITKEDELGLATTPKRGRPKGSISRTCSHCGLLASSIT 853

  Fly   323 TLKEHKQAVHVRTK-----------CTYCGKTVKNATLHAHLKKHLEEGEAELAQQLKKLEQLPV 376
            .|     .||:|.|           |.|...|..:...|...|||  :|..|:....|:...:.|
Mouse   854 NL-----TVHIRRKHSHQYSYLCKVCKYYTVTKGDMERHCATKKH--KGRVEIEANGKQSSDIVV 911

  Fly   377 NLQSQHLSSLESSVAEVTTASEGSNIPGESTVPEDSNVTENSSVPSIETSNHADIQC-PMGPPAN 440
            ..:..:|.:.:.|.:...|.|:     .:::.|..|: |.....|.:...|..|.:. .:.|..:
Mouse   912 GPEGGNLEACKDSTSLAVTVSD-----AQASKPAKSD-TRTLETPGVGIGNAGDAEAGSVFPSGD 970

  Fly   441 GEVP------------------DVADVASPSTEPTESVTKCSYCSDTFEKAQQLQAHVLATHTQ- 486
            ||:.                  .:.|..|.......|..||..|..:...|..|:.||...||: 
Mouse   971 GELSSQLSDKKGQLSLETEDLLQLDDACSQREVAGSSDNKCLQCEFSAHSAASLELHVKRKHTKE 1035

  Fly   487 -----------------------TRKRRRSSDNQSLVRKTTQEIPTSPIAKITKKQTIESKERVV 528
                                   |.|.|..  .||.:..::.|..:|   :|:|..||..:|.  
Mouse  1036 FQFYCMACDYYAVTRREMTRHAATEKHRMK--RQSYLSASSVEAGSS---EISKNITIPEEEH-- 1093

  Fly   529 LESSSQLDSTAQQESRTSATSN 550
            ..:|.:......|.|.|....|
Mouse  1094 SHNSEEFQIHPHQSSGTLQCRN 1115

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
E(var)3-9NP_649852.2 zf-AD 18..102 CDD:462262 8/53 (15%)
zf-C2H2_2 253..>334 CDD:463690 30/168 (18%)
C2H2 Zn finger 253..274 CDD:275368 10/50 (20%)
C2H2 Zn finger 281..303 CDD:275368 6/29 (21%)
PHA00732 310..>358 CDD:177300 17/99 (17%)
C2H2 Zn finger 311..332 CDD:275368 6/20 (30%)
C2H2 Zn finger 337..356 CDD:275368 5/18 (28%)
Zfp407NP_001028513.2 C2H2 Zn finger 180..200 CDD:275368
C2H2 Zn finger 209..230 CDD:275368
C2H2 Zn finger 524..552 CDD:275371 6/25 (24%)
C2H2 Zn finger 553..575 CDD:275371 4/35 (11%)
C2H2 Zn finger 1407..1436 CDD:275371
C2H2 Zn finger 1437..1459 CDD:275371
C2H2 Zn finger 1479..1500 CDD:275371
C2H2 Zn finger 1530..1552 CDD:275368
zf-H2C2_2 1548..1569 CDD:463886
C2H2 Zn finger 1560..1580 CDD:275368
C2H2 Zn finger 1588..1608 CDD:275368
zf-C2H2 1619..1641 CDD:395048
C2H2 Zn finger 1621..1641 CDD:275368
zf-H2C2_2 1633..1660 CDD:463886
C2H2 Zn finger 1649..1671 CDD:275368
C2H2 Zn finger 1679..1699 CDD:275368
zf-H2C2_2 1691..1716 CDD:463886
zf-H2C2_5 1705..1729 CDD:404746
C2H2 Zn finger 1707..1727 CDD:275368
zf-H2C2_2 1719..1744 CDD:463886
C2H2 Zn finger 1735..1752 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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