DRSC/TRiP Functional Genomics Resources

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Protein Alignment ich and ham

DIOPT Version :10

Sequence 1:NP_649848.2 Gene:ich / 41069 FlyBaseID:FBgn0286204 Length:592 Species:Drosophila melanogaster
Sequence 2:NP_724130.4 Gene:ham / 35135 FlyBaseID:FBgn0045852 Length:1108 Species:Drosophila melanogaster


Alignment Length:597 Identity:123/597 - (20%)
Similarity:188/597 - (31%) Gaps:181/597 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 SSLNALSDLKPLPPFTGYTGHLSINGISGHHYHAIAQRLPDESNNNYMQSAYHPQNQSNPTSTTQ 135
            |:|.:|:..|.....|| .|......::.||.|.....||           :.|...:..|||..
  Fly   494 STLTSLTKHKKFCDSTG-PGPYRNQHVNRHHQHPHQHPLP-----------HQPHLAATATSTCP 546

  Fly   136 SNGGSNSNSNNSNEHNIVSSSTCLPESVLS-------GSGGGGGGNDACLADVKL--------FA 185
            :....:|.|::|.....|::.:..|...|.       ..|....|....|....|        |:
  Fly   547 APPRESSESSSSAAAAAVAAMSTPPNPFLMFRTAPSFFPGFPPYGFPPFLPQNPLHPTNIPMFFS 611

  Fly   186 DSQLDSKLYSVADSCVMNGSGSGSAANGNGSGPSIATLTPIDQVADSL-------HNSGVRIYKD 243
            .:.:|              .|.|        ||.|.  :|:......|       .||..:.|..
  Fly   612 KNPMD--------------LGCG--------GPEIT--SPVSAFDQKLPFGFLKGENSESQAYDK 652

  Fly   244 LTEYVDMNSIDD-------IAAIIGSAIADTTVPNQLD-----KDDNNDTRDSWMDLDAWIDGNC 296
            :||...:...::       :.|..|.   :....:.||     :|..||::....|        .
  Fly   653 VTEKELVFKAEEKLKKEPLVQAFEGE---EDESRSSLDIKGKLEDTRNDSKSEEQD--------D 706

  Fly   297 IQQESAKVLVSQQDSLGD----FILPHSPLPMHASSS----------------------TLQSLL 335
            ::||..:|....|....|    ..:..:|.|....|.                      ...:|:
  Fly   707 MKQEPERVSTPDQQQAEDDRKSIDIMSTPPPADTPSGGDGPLDLSICRKRSAGSFFTAPAEDNLM 771

  Fly   336 SHGYMPLLQN-RLQNGPP----NGNSSGGGGGANQGAGIKGDPQAPTSTSYCNELAAATSSSCSP 395
            .|.:||.|.. ..:.|.|    ..:||.....:.:..  ||....||.|:     :...:.|.||
  Fly   772 LHRFMPRLHEFEAERGQPLKMRKSHSSAESSTSQKSH--KGSSPTPTPTA-----SPGLTPSPSP 829

  Fly   396 P---GSVVSTTDNPNGLMI---------NPRYLSNPTNNQATGNLHQQGGYSMQASGLSLKDNGL 448
            |   |..:|:|.....:..         :....|.||..|.....|......:..||...    |
  Fly   830 PTSAGGELSSTSEGGAVPTMAAAAFAADHSALASGPTLPQTHPTFHPLLLEEIYRSGFPF----L 890

  Fly   449 CSPDLLGNYPHTTTASTTGSE-MRTGAPKAKRSRSQKKSNQQQQQQQQQQQQQGDGGGQPTTPQM 512
            |.|           ....|.| :..||..|                           ..|..|  
  Fly   891 CQP-----------GGRRGIEALLAGAASA---------------------------AAPKRP-- 915

  Fly   513 SAISPSGFSASDLSGLLGKEKPVHRCSICNRGFLNKSNIKVHLRTHTGEKPFRCDVCAKAFRQKA 577
              :.|..|||..:.||  |.|..:.|..|.:.|...:|:..||||||||:|:.|..|.:||...:
  Fly   916 --LPPVKFSAGSVVGL--KTKDRYSCKFCGKVFPRSANLTRHLRTHTGEQPYPCKYCDRAFSISS 976

  Fly   578 HLLKH-QQIHKR 588
            :|.:| :.||.:
  Fly   977 NLQRHVRNIHNK 988

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ichNP_649848.2 zf-C2H2 536..558 CDD:395048 7/21 (33%)
C2H2 Zn finger 538..558 CDD:275368 7/19 (37%)
zf-H2C2_2 550..575 CDD:463886 14/24 (58%)
C2H2 Zn finger 566..586 CDD:275368 6/20 (30%)
hamNP_724130.4 PR-SET_ZFPM 131..253 CDD:380978
C2H2 Zn finger 341..363 CDD:275368
C2H2 Zn finger 371..392 CDD:275368
SFP1 <391..479 CDD:227516
C2H2 Zn finger 400..421 CDD:275368
SUF4-like 403..>445 CDD:411020
C2H2 Zn finger 403..421 CDD:411020
C2H2 Zn finger 429..449 CDD:275368
C2H2 Zn finger 457..477 CDD:275368
C2H2 Zn finger 486..504 CDD:275368 3/9 (33%)
PTZ00121 <641..>728 CDD:173412 18/97 (19%)
COG5048 935..>1028 CDD:227381 21/54 (39%)
zf-C2H2 935..957 CDD:395048 7/21 (33%)
C2H2 Zn finger 937..957 CDD:275368 7/19 (37%)
zf-H2C2_2 949..973 CDD:463886 13/23 (57%)
C2H2 Zn finger 965..986 CDD:275368 6/20 (30%)
C2H2 Zn finger 994..1014 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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