DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pyd and dlg3

DIOPT Version :9

Sequence 1:NP_001246998.1 Gene:pyd / 41062 FlyBaseID:FBgn0262614 Length:2395 Species:Drosophila melanogaster
Sequence 2:XP_021328515.1 Gene:dlg3 / 564081 ZFINID:ZDB-GENE-050208-93 Length:940 Species:Danio rerio


Alignment Length:1034 Identity:234/1034 - (22%)
Similarity:384/1034 - (37%) Gaps:328/1034 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   156 LGKQKTRSRSRSNSVGNRSITSCMGGGGGGGEKERERGGDRDRPYIRNVDDLLQALGKRDGGD-- 218
            :|...|..||:...:.       .||.||...|.:.:||    |.:.         |...||.  
Zfish    61 MGGGGTLGRSKGKMMS-------AGGPGGPNPKSQSKGG----PKVN---------GNNSGGQGG 105

  Fly   219 -------NNSNLLETAS------THSSSQRRRFKKGDRTTWEYHTVAVTRVPGYGFGIAVSGGRD 270
                   :|.:..:.|:      ...|.....:..|....::|..:.:.| ...|.|.:::||.|
Zfish   106 WWPECTCSNRDWYDQANPPPIIVNADSLDAGPYVNGSDGMYKYEEIILER-GNSGLGFSIAGGMD 169

  Fly   271 NPHFANGDPSIAVSDVLKGGPA--EDRLQVNDRIISVNGVSLENVEYATAVQVLRDSGNTVQLVV 333
            |||..: ||.|.::.::.||.|  :.||.|||.::.||.|.:..|.::.||:.|:::|..|:|:|
Zfish   170 NPHIPD-DPGIFITKIIPGGAAAMDGRLGVNDCVLRVNDVDVSEVVHSKAVEALKEAGPVVRLLV 233

  Fly   334 KRR-VPLNPI--------------NAAGAVQHQHSHSLSSVGLMANGSGGVAPTPITSLSQPNSL 383
            :|| .|...|              :.||.:.:||....:|:.:.....||.|             
Zfish   234 RRRQAPPETILEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAA------------- 285

  Fly   384 NSSLVQNASSGQPIKVTLTKGGKKDDYGVVLGCRLFVKEISSKAREQLNANGYSLQEGDIITRIH 448
                              .|.|:                               ||.||.:..::
Zfish   286 ------------------QKDGR-------------------------------LQTGDRLLAVN 301

  Fly   449 NTNCGDTMSLKEAKKIIDGCKERLNLVVLRDITNQTAVSQLNLNNSASHQASGNIYATHQPQVSG 513
            |                         ::|:|:.::.||:.|.       ..|..:|      :..
Zfish   302 N-------------------------IILQDVRHEEAVAALK-------NTSDMVY------LKV 328

  Fly   514 CSSSNNNLEDPYLPGGASYSSQNLYVQP--PTRTSNGPNINGNGLNDEKSNLTPRGRSRGPIMDG 576
            ......:|.|.|.|  ..||| :|.:.|  ||...|....|                |....|.|
Zfish   329 AKPGPVHLNDMYAP--PDYSS-SLGLPPAFPTMVDNHVGHN----------------SSMAYMGG 374

  Fly   577 VSLQQLDRP--VTPTR---------GRS---------AAIDEP---PRPPPPRGSSGGAAQEDFY 618
            :..:.:.:|  |||:|         |..         :||.:|   ..||.|...|.|:......
Zfish   375 MEPKPVYQPPQVTPSRYSPVPRHMLGEEDFTRAEPIYSAIHKPHGDTSPPSPHLCSRGSGDVGCS 439

  Fly   619 SSRRQL------YEERQSAEPRFISFQKEGSVGI--RLTGGNEA-GIFVTAVQPGSPASLQG-LM 673
            .:...|      |..|   |||.|...| ||.|:  .:.||.:. ||||:.:..|.||.|.| |.
Zfish   440 PAPPALCQSLVPYTGR---EPRKILLHK-GSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELR 500

  Fly   674 PGDKILKVNDMDMNGVTREEAVLFLLSLQDRIDLIVQYCKEEY-----------DEVVTNQRGD- 726
            .||:||.||.:::...|.|:|...|......:.:|.||..|||           ::::.:.... 
Zfish   501 RGDRILSVNGVNLRNATHEQAAAALKRAGQTVTIIAQYRPEEYSRFESKIHDLREQMMNSSMSSG 565

  Fly   727 ----------SFHIKTHFHCDN------PSKGEMAFKAGDVFRVIDTLHNGVVGSWQVLKIGRGH 775
                      |.:::..|..|.      ||:| ::|..||:..||    |.....|...::...|
Zfish   566 SGSLRTSEKRSLYVRALFDYDRTRDSCLPSQG-LSFSYGDILHVI----NASDDEWWQARLVTPH 625

  Fly   776 QEMQR-GVIPNKSR-------------AEELATAQFNATKKEMNANE---SRGNFFRRRRSTHRR 823
            .|.:: ||||:|.|             ...|.|.:|:|....:.:|.   .|.|..|..:...::
Zfish   626 GESEQIGVIPSKKRYSTANRPGVEKKERARLKTVKFHARTGMIESNREMFGRMNDIRPVKVKRKK 690

  Fly   824 SKSLSRE-----------------------NWDDVVFSDSISK-----FPAYERVVLRHPGFVRP 860
            |.:|||:                       |..|   |:|.||     ..:||.|:.:...:.||
Zfish   691 SFNLSRKFPFYKSKENIVQELVETEQCLTSNTSD---SESSSKGQEDTILSYEPVIRQEIHYTRP 752

  Fly   861 VVLFGPVSDLARERLAKDFPDKFSTPL--------------QD--------------DDKSAATS 897
            |::.||:.|...:.|..:||.||.:.:              ||              .|.....:
Zfish   753 VIILGPMKDRVNDDLISEFPHKFGSCVPHTTRPRRENEMDGQDYHFVGSREQMEKDIQDNKFIEA 817

  Fly   898 GKCRI----VRLSNIRDVMDRGKHALLDITPNAVDRLNYAQFYPVVIFLKTDSKHVIKQLRHGLP 958
            |:...    ..:.::|.|.:||||.:||::.||:.||..||.||:.||:|..|...:.:|.   .
Zfish   818 GQFNENLYGTSILSVRAVAERGKHCILDVSGNAIKRLQQAQLYPIAIFIKPKSVEALMELN---K 879

  Fly   959 KAAHKSSKKLLEQCQKLERVWSHIFSTQIALSDEESWYRKLRDSIDLQQSGAVWMSESK 1017
            :..::.:.|:.::..|||:.:...|:..:.....:..|.|::..|:.|....:|:..::
Zfish   880 RQTYEQANKVFDKAMKLEQEFGEFFTAIVQGDSLDEIYNKIKLIIEEQSGPYIWIPSAE 938

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pydNP_001246998.1 PDZ_signaling 249..334 CDD:238492 30/86 (35%)
PDZ_signaling 396..477 CDD:238492 7/80 (9%)
PDZ_signaling 633..710 CDD:238492 30/80 (38%)
SH3_ZO 729..790 CDD:212793 20/80 (25%)
GuKc 831..1007 CDD:214504 53/212 (25%)
ZU5 2263..2351 CDD:279170
dlg3XP_021328515.1 MAGUK_N_PEST <109..149 CDD:313762 4/39 (10%)
PDZ_signaling 150..234 CDD:238492 30/85 (35%)
PDZ_signaling 243..329 CDD:238492 23/185 (12%)
PDZ_assoc 330..409 CDD:313755 22/97 (23%)
PDZ 456..540 CDD:214570 33/84 (39%)
SH3_DLG3 575..639 CDD:212962 20/68 (29%)
Guanylate_kin 749..927 CDD:279019 44/180 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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