DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pyd and magu-1

DIOPT Version :9

Sequence 1:NP_001246998.1 Gene:pyd / 41062 FlyBaseID:FBgn0262614 Length:2395 Species:Drosophila melanogaster
Sequence 2:NP_497201.1 Gene:magu-1 / 190302 WormBaseID:WBGene00021914 Length:567 Species:Caenorhabditis elegans


Alignment Length:464 Identity:90/464 - (19%)
Similarity:168/464 - (36%) Gaps:145/464 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   656 IFVTAVQPGSPASLQG-LMPGDKILKVNDMDMNGVT------REEAVLFLLSLQDRID---LIVQ 710
            ::|..:.....|...| :..||::|:|     ||:|      ||     ::.|.|:.|   :..:
 Worm   151 VYVARIMANGVADRSGCIQEGDRVLEV-----NGITVADKEPRE-----IVKLLDKCDNGIITFK 205

  Fly   711 YCKEEYDEVVTNQRGDSFHIKTHFHCD------NP-SKGEMAFKAGDVFRVIDTLHNGVVGSWQV 768
            ....|.::.:..::....:.:..|..|      :| .:..::|:.||:..::|....   ..||.
 Worm   206 LIPAEINQKLKQKKSSHRYARALFDYDPWQDKRHPCPEAAISFRGGDILEILDEKDQ---YWWQT 267

  Fly   769 LKIGRG--------HQEMQR------GVIPNKSRAEELATAQFNATKKEMNANES--------RG 811
            .|||.|        |.:..|      |::|:     |....|....:..::.::.        :|
 Worm   268 RKIGFGALARRKESHDDENRDDSKKVGLVPS-----EWLQCQSEIPENGIDTSDDFQSFLENHKG 327

  Fly   812 NF----FRRRRSTHRRSKSLSRENWDDVVFSDSISKFPAYERVVLRHPGFVRPVVLFGPVSDLAR 872
            .|    ||.|....||.          ||             |:|..||..|..:         |
 Worm   328 RFYESVFRWRNKKKRRR----------VV-------------VLLGAPGVGRNEI---------R 360

  Fly   873 ERLAKDFPDKFST----------PLQDDDKSAATSGKCRIVRLSNIRDVMDRGKH---------- 917
            .:..|.|.|:|:.          |.:.|..:...:.:..:.|:...:::::.|:.          
 Worm   361 RQFFKVFADRFTNAIPHTSRPQRPNESDGVNYYFTSRSEMERMIERKEMLEYGEFRDNLYGTALK 425

  Fly   918 ----------ALLDITPNAVDRLNYAQFYPVVIFLKT----DSKHVIKQLRHGLPKAAHKSSKKL 968
                      .||...|.|::.:...:|.|:|||::.    :.||..:..|....::...:|...
 Worm   426 SVRKASEKGTVLLTPHPLAIENIRTWEFAPIVIFVQPPEFGEFKHTREVYRSQTTRSHSAASSSN 490

  Fly   969 LEQ---CQKLERVWSHIFSTQIA--LSDEESWYRKLRDSI----DL-----QQSGAVWMSESK-- 1017
            :.|   .....|.:|.:...||.  .:..|..||...|:|    ||     :.:|.::..|||  
 Worm   491 ISQNTAATSAARAFSDVEIRQIIDNSAQMEQKYRGYCDAIIRNVDLDTTMNELTGLIYQLESKAT 555

  Fly  1018 --PVESLSD 1024
              |::.|.|
 Worm   556 WMPMKWLDD 564

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pydNP_001246998.1 PDZ_signaling 249..334 CDD:238492
PDZ_signaling 396..477 CDD:238492
PDZ_signaling 633..710 CDD:238492 15/63 (24%)
SH3_ZO 729..790 CDD:212793 17/81 (21%)
GuKc 831..1007 CDD:214504 41/223 (18%)
ZU5 2263..2351 CDD:279170
magu-1NP_497201.1 PDZ_signaling 128..201 CDD:238492 15/59 (25%)
SH3_MPP 224..300 CDD:212796 17/83 (20%)
Guanylate_kin 348..550 CDD:279019 39/210 (19%)
NK 353..543 CDD:302627 36/198 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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