DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pyd and grip2

DIOPT Version :9

Sequence 1:NP_001246998.1 Gene:pyd / 41062 FlyBaseID:FBgn0262614 Length:2395 Species:Drosophila melanogaster
Sequence 2:XP_031757025.1 Gene:grip2 / 100495373 XenbaseID:XB-GENE-854056 Length:1115 Species:Xenopus tropicalis


Alignment Length:1257 Identity:242/1257 - (19%)
Similarity:400/1257 - (31%) Gaps:445/1257 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 LQLVSAPKVHIAGEYLASEQQQQQQQQQQQHQQVQEQQQLGRRKAAAAAEINLANQVYWLGKQKT 161
            |::|..|......|.:.:|:.:.....|:..::              :.|..|.:....:.....
 Frog     8 LRIVRRPSRRKKRESIRAEEDEDDDGDQESQEE--------------SCEEGLCSLSLCVSDDGP 58

  Fly   162 RSRSRSNSVGN---------------RSIT---------SCMG----GGGGGGEKER----ERGG 194
            .|:...:..||               |.:|         |.:|    ||.....|.|    ..||
 Frog    59 YSKGNKDPAGNDLALVSRRQSIPEEFRGVTIVELIKKEGSTLGLTISGGTDKDGKPRVSNLRSGG 123

  Fly   195 DRDRPYIRNVDDLLQALGKRDGGDNNSNLLETASTHSSSQRRRFKKGDRTTWEYH---------- 249
            ...|....|:.|.::::       |..||  |...|..........|:|...|..          
 Frog   124 LAARSDQLNIGDYIKSV-------NGINL--TKLRHEEIISLLKNVGERVVLEVEYELPPATPDN 179

  Fly   250 -------TVAVTRV-PGYGFGIAVSGG-RDNPHFANGDPSIAVSDVLKGGPA--EDRLQVNDRII 303
                   |:.:|.. .|..||..:.|| .::.|.:.   .:.|:.|..||||  |..|:|:||::
 Frog   180 SSAIIPKTIEITLCKEGNSFGFVMRGGAHEDWHKSR---PLVVTYVRPGGPADREGTLKVSDRLL 241

  Fly   304 SVNGVSLENVEYATAVQVLRDSGNTVQLVVKRRVPLNPINAAGAVQHQHSHSLSSVGLMANGSG- 367
            .|:|:||.|:.:..|:.:||.........::..|.|                   :..:.|.|| 
 Frog   242 CVDGISLHNITHTDALSILRQCSQEAVFQIEYDVAL-------------------MDTVTNASGP 287

  Fly   368 ---GVAPTPITSLSQPNSLNSSLVQNASSGQPIKVTLTKGGKKDDYGVVLGCRLFVKEISSKARE 429
               .:|.||                    |..:.::|:.|..::...:|:.        ..|...
 Frog   288 LLVEIAKTP--------------------GSTLGISLSTGTHRNKQVIVID--------KVKPAS 324

  Fly   430 QLNANGYSLQEGDIITRIHNTNCGDTMSLKEAKKIIDGCKERLNLVVLRDITNQTAVSQLNLN-- 492
            .::..| :|..||.|..|..|:. :..:|.||.:::....|.:.|.:|     ....|:|:|.  
 Frog   325 VVDRCG-ALHPGDHILSIDGTST-EHCTLMEATQLLASIIENVKLEIL-----PAHHSRLSLRPP 382

  Fly   493 NSASHQASGN-------IYATHQPQVSGC------SSSNN---------NLEDPYLPGGASYSSQ 535
            .:...|.|.:       :...|.|....|      |:||.         |.....:.|...:|||
 Frog   383 ETVKVQKSDHHHCWDPCVNYCHTPHPGHCKTPTWNSTSNQEYCKSLVAANFSSSSVAGTPGFSSQ 447

  Fly   536 NLYVQPPTRTSNGPNI----NGNGLNDEKSNLTPRGRSRGPIMDGVSLQQLDRPVTPTRGRSAAI 596
            |....|.|.....|..    ......|.||:|:....:.||   |..:...:......||     
 Frog   448 NSNTLPRTAHPMSPRTTMSRRRQKRKDHKSSLSLASSTVGP---GGQIIHTESTEIILRG----- 504

  Fly   597 DEPPRPPPPRGSSGGAAQEDFYSSRRQLYEERQSAEPRFISFQKEGSVGIRLTGGNEAGIFVTA- 660
                  .|..|                                    .||:|.|    |||.|. 
 Frog   505 ------DPLNG------------------------------------FGIQLQG----GIFATET 523

  Fly   661 ---------VQPGSPASLQGLMP-GDKILKVNDMDMNGVTREEAVLFL--LSLQDRIDLIVQYCK 713
                     ::|.|||...||:. ||::|.:|.:.....|.|||...|  .:|.:::.|.:::  
 Frog   524 LSSPPLIRFIEPDSPAERCGLLQVGDRLLSINGILTEDGTLEEANQLLRDAALSNKVALEIEF-- 586

  Fly   714 EEYDEVVTNQRGDSFHIKTHFHCDNPSKGEMAFKAGDVFRVIDTLHNGVVGSWQVLKIGRGHQEM 778
             :..|.|....| :||:|                                               
 Frog   587 -DVAESVVPSSG-TFHVK----------------------------------------------- 602

  Fly   779 QRGVIPNKSRAEELATAQFNATKKE----MNANESRGNFFRRRRSTHRRSKSLSREN--WDDVVF 837
                :| |.:..||.....:|::|.    :.::..:|:...|..:.....|.|:.:|  .|:...
 Frog   603 ----LP-KRKGVELGITISSASRKPGEPLIISDIKKGSVAHRTGTLEPGDKLLAIDNIRLDNCSM 662

  Fly   838 SDSISKFPAYERVVLRHPGFVRPVVLFGPVSDLARERLAKDFPDKFSTPLQDDDKSAATSGKCRI 902
            .|::.        :||.            ..||.:.::.||         :|:.....|||    
 Frog   663 EDAVQ--------ILRQ------------CEDLVKLKIRKD---------EDNSDEQETSG---- 694

  Fly   903 VRLSNIRDVMDRGKHALLDITPNAVDRLNYAQFYPVVIFLKTDSKHVIKQLRHGLPKAAHKSSKK 967
               :.|..|..:.....|.||.:..:.    .|.|:||              .||.|      :.
 Frog   695 ---AIIYTVELKRYGGPLGITISGTEE----PFDPIVI--------------SGLTK------RG 732

  Fly   968 LLEQCQKLERVWSHIFSTQIALSDEESWYRKLRDSID-LQQSG-AVWMSESKPVESLSDDFLFPM 1030
            |.|:...:     ||....:|:::.....:.|.::|. ||.:| .|.:...|..|.     :||.
 Frog   733 LAERTGAI-----HIGDRILAINNVSLKGKPLSEAIHLLQMAGETVTLKIKKQAER-----IFPQ 787

  Fly  1031 TTS-RLSYASSPESDLELSPGPSASLSLGNLPQLVKASSDPSIATNQDNLDRDRDIIGEGLPPPY 1094
            ..| .::..|.||.||                            |:.....:..||         
 Frog   788 RLSDSMNEGSDPEDDL----------------------------TDSQKTSKLSDI--------- 815

  Fly  1095 TVPYDHAVPANPNRRQTMDSS----KYSIYGTNVPPQQQQPGVG------------GDTAAVRPQ 1143
               |..|||:..:..::.|.|    .|...||.||   |..|:.            ..|..|..:
 Frog   816 ---YSTAVPSVDSALESWDGSGIDAGYGSQGTYVP---QAVGISLHPHEWRTSRQKSSTPPVEHR 874

  Fly  1144 SLYGINAPDLPPRIDRQ--SKPGDIPLNTSGSSSRNGTLGRSAQERLFGKAVVQDDV----QAEY 1202
            ..|    |.|....:.|  .||...|...:|..:.:.    .:..|:||:|:  :|:    |:|.
 Frog   875 KSY----PFLDGSFNEQDWEKPTRYPSQPNGLEADHD----DSFWRVFGEAL--EDLETCGQSEL 929

  Fly  1203 ---ITRNALVGSGAAETLDRQQ 1221
               |..:.:.||.....||..|
 Frog   930 LREIEASIMTGSVQGLGLDSSQ 951

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pydNP_001246998.1 PDZ_signaling 249..334 CDD:238492 27/105 (26%)
PDZ_signaling 396..477 CDD:238492 16/80 (20%)
PDZ_signaling 633..710 CDD:238492 25/89 (28%)
SH3_ZO 729..790 CDD:212793 4/60 (7%)
GuKc 831..1007 CDD:214504 33/178 (19%)
ZU5 2263..2351 CDD:279170
grip2XP_031757025.1 PDZ_signaling 87..169 CDD:238492 20/90 (22%)
PDZ_signaling 187..272 CDD:238492 27/87 (31%)
PDZ_signaling 287..370 CDD:238492 20/112 (18%)
PDZ_signaling 499..585 CDD:238492 29/136 (21%)
PDZ_signaling 598..681 CDD:238492 20/154 (13%)
PDZ_signaling 697..778 CDD:238492 23/109 (21%)
PDZ_signaling 1007..1084 CDD:238492
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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