DRSC/TRiP Functional Genomics Resources

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Protein Alignment pyd and apba3

DIOPT Version :9

Sequence 1:NP_001246998.1 Gene:pyd / 41062 FlyBaseID:FBgn0262614 Length:2395 Species:Drosophila melanogaster
Sequence 2:XP_002941438.2 Gene:apba3 / 100495034 XenbaseID:XB-GENE-995533 Length:630 Species:Xenopus tropicalis


Alignment Length:227 Identity:48/227 - (21%)
Similarity:82/227 - (36%) Gaps:88/227 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   253 VTRVPGYGFGIAV---------------SGGR-------DNPHFANGD----------------- 278
            :.:..|..||:|.               ||.|       |.|||:..|                 
 Frog   398 IAQAIGQAFGLAYQKFLCSDRVGPLTSGSGQREEHLYNADLPHFSKSDSCREVYIQKQRGEMLGI 462

  Fly   279 -----------PSIAVSDVLKGGPAE--DRLQVNDRIISVNGVSLENVEYATAVQVLRDSGNTVQ 330
                       |::.:::::.|||||  ..|.:.|.:.||||.||..:.::|...::||      
 Frog   463 AVVESGWGSLLPTVVIANLMHGGPAERSGDLSIGDHVTSVNGTSLVGLPFSTCQGLIRD------ 521

  Fly   331 LVVKRRVPLNPINAAGAVQHQHSHSLSSVGLMANGSGGVAPTPITSLSQPNSLNSSLVQNASSGQ 395
                             ::.|....||.|.         .|..||::.|..|::..|......| 
 Frog   522 -----------------LKGQSEVILSIVR---------CPPVITAIIQRPSVSHQLGFCVEDG- 559

  Fly   396 PIKVTLTKGGKKDDYGVVLGCRLFVKEISSKA 427
             :..:|.:||..:..|:.:|.|:.  ||:.::
 Frog   560 -VICSLVRGGIAERGGIRVGHRII--EINGQS 588

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pydNP_001246998.1 PDZ_signaling 249..334 CDD:238492 29/132 (22%)
PDZ_signaling 396..477 CDD:238492 8/32 (25%)
PDZ_signaling 633..710 CDD:238492
SH3_ZO 729..790 CDD:212793
GuKc 831..1007 CDD:214504
ZU5 2263..2351 CDD:279170
apba3XP_002941438.2 PTB_X11 269..414 CDD:269919 4/15 (27%)
PDZ_signaling 448..525 CDD:238492 17/99 (17%)
PDZ_signaling 538..611 CDD:238492 14/55 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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