DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pyd and sntb2

DIOPT Version :9

Sequence 1:NP_001246998.1 Gene:pyd / 41062 FlyBaseID:FBgn0262614 Length:2395 Species:Drosophila melanogaster
Sequence 2:XP_002666958.1 Gene:sntb2 / 100331323 ZFINID:ZDB-GENE-131121-511 Length:519 Species:Danio rerio


Alignment Length:541 Identity:111/541 - (20%)
Similarity:185/541 - (34%) Gaps:147/541 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   189 ERERGGDRDRP----YIRNVDDLLQALGKRDGGDNNSNLLETASTHSSSQRRRFKKG-DRTTWEY 248
            |.|.||....|    :::|        |..:|.:.|.::......:.:|..|....| |..:..|
Zfish    39 EGEPGGPAGYPEHNSHLKN--------GVSNGNEQNRDVFTNRVQYDNSPGRVNGTGSDSESSGY 95

  Fly   249 ------HTVAVTRVPGYGFGIAVSGGRDN--PHFANGDPSIAVSDVLKGGPAED--RLQVNDRII 303
                  ..|.:.:....|.||::.|||:|  |        |.:|.:..|..|:.  .|:|.|.|:
Zfish    96 CDSEGVRRVRIVKQESGGLGISIKGGRENRMP--------ILISKIFPGLAADQSRALRVGDAIL 152

  Fly   304 SVNGVSLENVEYATAVQVLRDSGNTVQLVVKRRVPLNPINAAGAVQHQHSHSLSSVG-LMANGSG 367
            ||||..|.:..:..|||.|:.:|..|.|.||....::|:....::    |..||..| |.:....
Zfish   153 SVNGSDLRDATHDAAVQALKKAGKEVTLEVKYIREVSPLFKKSSM----SADLSWDGRLQSPNLS 213

  Fly   368 GVAPTPITSLSQPNSL----NSSLVQNASSGQPIKVTLTKGGKKDDYGVVLGCRLFVKEISSKAR 428
            ....:|.:|:|:...:    .|.:.:|.:...|....|........:.|||.|           :
Zfish   214 SSDESPKSSVSRDRKVIPLKMSFISRNLTMPDPENRLLELHSPDGQHTVVLRC-----------K 267

  Fly   429 EQLNANGYSLQEGDIITRIH---------------------NTNCGDTMSLKEAKKII-----DG 467
            :...|:.:       .|.||                     ||:|    :||....::     ||
Zfish   268 DGATAHSW-------FTAIHTNVAALLPQTLSYINTFLNNANTHC----TLKHIGWLVEQLDMDG 321

  Fly   468 CKERLNLVVL----RDITNQTAVSQLNLNNSASHQASGNIYATHQPQVSGCSSSNNNLEDPYLPG 528
            .:.:...|::    :||....||..       ::::......||....:....|.:....|.|.|
Zfish   322 SRHQYKRVIMALTEKDILLFQAVPW-------TYESWTTPVLTHPLLATRLVHSGSVRSSPALGG 379

  Fly   529 GASYSSQNLYVQPPTRTSNGPNINGN--------GLNDEKSNLTPRGRSRGPIMDGVS------- 578
            ...::         |||..|..|..:        .|:.....|...|.|...::..||       
Zfish   380 DLLFA---------TRTGTGRGIESHVFRVETHWDLSTWTRALVQGGHSAAELIKEVSIGCVLNR 435

  Fly   579 -----LQQLDRPVTPTRGRSAAIDEPPRPPPPRGSSGGAAQEDFYSSRRQLYEERQSAEPRFISF 638
                 :...:|..|.||                 .||.:....|...|.::..: ......|:.|
Zfish   436 QNVRLILHYERGFTVTR-----------------ESGDSVLFHFPYERLKMSAD-DGVRNLFLDF 482

  Fly   639 -QKEGSVGIRLTGGNEAGIFV 658
             ..||.:...|..|.:..:||
Zfish   483 GAPEGEMVFELHSGPKPVVFV 503

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pydNP_001246998.1 PDZ_signaling 249..334 CDD:238492 29/88 (33%)
PDZ_signaling 396..477 CDD:238492 18/106 (17%)
PDZ_signaling 633..710 CDD:238492 8/27 (30%)
SH3_ZO 729..790 CDD:212793
GuKc 831..1007 CDD:214504
ZU5 2263..2351 CDD:279170
sntb2XP_002666958.1 PDZ_signaling 101..183 CDD:238492 29/89 (33%)
PHsplit_syntrophin <228..285 CDD:269960 12/74 (16%)
PH 307..415 CDD:278594 22/123 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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