DRSC/TRiP Functional Genomics Resources

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Protein Alignment pyd and pdzk1

DIOPT Version :9

Sequence 1:NP_001246998.1 Gene:pyd / 41062 FlyBaseID:FBgn0262614 Length:2395 Species:Drosophila melanogaster
Sequence 2:XP_031752326.1 Gene:pdzk1 / 100145801 XenbaseID:XB-GENE-1013787 Length:621 Species:Xenopus tropicalis


Alignment Length:570 Identity:112/570 - (19%)
Similarity:188/570 - (32%) Gaps:186/570 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   244 TTWEYHTVAVTRVPGYGFGIAVSGGRDNPHFANGDPSIAVSDVLKGGPAEDR-LQVNDRIISVNG 307
            :|.:..|..||:..|.|||..:...||       :....|..|..|..||.. |:..||::.|||
 Frog     3 STTQPRTCTVTKQEGKGFGFYLRIERD-------EVGHLVRSVEPGSSAEKAGLKDGDRVMKVNG 60

  Fly   308 VSLENVEYATAVQVLRDSGNTVQLVVKRRVPLNPINAAGAVQHQHSHSLS--------SVGLMAN 364
            ..:::.|:|..|.:::|||.||.|.|..:....  |......:::|:..:        ....:||
 Frog    61 KFVDDKEHAEVVALIKDSGTTVTLEVLDKTAYE--NTKKKEDNKNSNQPAKQPEAPQPGAQPLAN 123

  Fly   365 GSGGVAPTP--------------------------ITSLSQPNSL---------------NSSLV 388
            |...:...|                          ..|...||.:               |...|
 Frog   124 GGKALKRRPRLCYLIKEGNSSYGFSLKTTKCENGIFLSALVPNGIAAKAGVKDDDRIIEVNGKNV 188

  Fly   389 QNASSGQPIKVTLTKGGK---------KDDY-----GVVLGCRLFVKEISSKARE---QLNANGY 436
            ::::..:..|:....|||         .|:|     ..:...:..|:.:.||.|.   :.:.|||
 Frog   189 EDSTHDKLAKMLKESGGKIMFLVSDKATDEYFKSQTMAITADKANVELLPSKPRTVELKKDTNGY 253

  Fly   437 ---------------------------SLQEGDIITRIHNTNCGDTMSLKEAKKIIDGCKERLNL 474
                                       .||:.|.|..: |..|.:....:|..|:|....::..|
 Frog   254 GFYLRQEKNRKGHFIMEIDSGSPAEKAKLQDYDRIVAV-NGECVEAKDHEEVVKVIQKGGDKTTL 317

  Fly   475 VVLRDITNQTAVSQLNLNNSASHQASGNIYATHQPQVSGCSSSNNNLEDPYLPGGASYSSQNLYV 539
            ::....|::                   :|:     ::|.|        ||           ||:
 Frog   318 LIADKKTDE-------------------MYS-----LAGVS--------PY-----------LYL 339

  Fly   540 QPPTRTSNGPNINGNGLNDEKSNLTPRGRSRGPIMDGVSLQQLDRPVTPTRGRSAAIDEPPRPPP 604
            |         ...|...:..|...||        ...|...|...|.......||.  ||.:|..
 Frog   340 Q---------ETQGEIKSSSKEEATP--------APAVVPSQTPTPTVAPAQPSAV--EPKKPET 385

  Fly   605 PRGSSGGAAQEDFYSSRRQLYEERQSAEPRFISFQK-EGSVGIRLTGGNEA-GIFVTAVQPGSPA 667
            |...:||                 |..:||....|| ....|..|....:. |:|:..|..|..|
 Frog   386 PAAPTGG-----------------QKHKPRLCKLQKGNNGYGFHLNAIKDTPGLFMNQVLKGGSA 433

  Fly   668 SLQGLMPGDKILKVNDMDMNGVTREEAVLFLLSLQDRIDLIVQYCKEEYD 717
            .:.|:...|.:::||.::|...:.|:.::.:...:..:.|:|. .:|.||
 Frog   434 DVAGIKNDDVLVEVNGVNMEKESYEDVLIKIKETKGILTLLVA-SQEAYD 482

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pydNP_001246998.1 PDZ_signaling 249..334 CDD:238492 29/85 (34%)
PDZ_signaling 396..477 CDD:238492 23/124 (19%)
PDZ_signaling 633..710 CDD:238492 18/78 (23%)
SH3_ZO 729..790 CDD:212793
GuKc 831..1007 CDD:214504
ZU5 2263..2351 CDD:279170
pdzk1XP_031752326.1 PDZ_signaling 7..87 CDD:238492 29/86 (34%)
PDZ_signaling 132..211 CDD:238492 10/78 (13%)
PDZ_signaling 241..320 CDD:238492 14/79 (18%)
gliding_GltJ <348..>390 CDD:411345 12/51 (24%)
PDZ 396..475 CDD:214570 18/78 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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