DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pyd and magi2b

DIOPT Version :9

Sequence 1:NP_001246998.1 Gene:pyd / 41062 FlyBaseID:FBgn0262614 Length:2395 Species:Drosophila melanogaster
Sequence 2:XP_021326360.1 Gene:magi2b / 100001810 ZFINID:ZDB-GENE-141211-6 Length:1171 Species:Danio rerio


Alignment Length:1045 Identity:210/1045 - (20%)
Similarity:361/1045 - (34%) Gaps:338/1045 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   260 GFGIAVSGGRDNPHFANGDPSIAVSDVLKGGPA--EDRLQVNDRIISVNGVSLENVEYATAVQVL 322
            |||..:.|| |.|     |..:.|..|:..|||  :.::...|.|:.:|.:.:....:|..|::.
Zfish   275 GFGFTIIGG-DEP-----DEFLQVKSVIPEGPAAQDSKMDTGDVIVYINDICVLGTTHADVVKLF 333

  Fly   323 RD--SGNTVQLVVKRRVPL----------NPINAAGAVQH-----------QHSHSLSSVGLMAN 364
            :.  .|.:|.||:.|..||          :.:...|.|.|           .:...:|..|.:..
Zfish   334 QSVPIGQSVTLVLCRGYPLPYDPEDPSASSSMPPLGLVDHPLLLNGRNNYENYMEYMSLTGRLVP 398

  Fly   365 GSG-GVAPTP---ITSL--SQPNSL-------NSSLVQNASSG---------QPIKVTLTKGGKK 407
            ..| |:.|.|   .|.|  |||.||       :.|:...:|||         :.:.:|:|||.:.
Zfish   399 EHGEGLTPLPHPGDTHLDGSQPPSLTTPGPPPDDSVSMASSSGATAGATVAPELLSLTITKGAEG 463

  Fly   408 DDYGVVLGCRLFVKEISSKAREQLNANGY-SLQEGDIITRIHNTNCGDTMSLKEAKKIIDGCK-- 469
                  .|..:.......:.::.|...|. .|.|||:|..| |..|...::..:..:::..|.  
Zfish   464 ------FGFTIADSPTGQRVKQVLEPQGCPGLCEGDLIVEI-NQKCLQGLNHTQVVQLLKDCPVG 521

  Fly   470 ERLNLVVLRDITNQTAVSQLNLNNSASHQASGNIYATHQPQVSGCSSSNNNLEDPYLPGGASYSS 534
            ....||:.|..|..|......|.:....|.|        || :|.|::       .||.||.:.:
Zfish   522 TEATLVIQRGTTFSTWKEGRTLKDRWDPQGS--------PQ-TGLSAT-------LLPHGAPHPA 570

  Fly   535 QNLYVQPPTRTSNGPNINGNGLNDEKSNLTPRGRSRGPIMDGVSLQQLDRPVTPTRGRSAAIDEP 599
            |.|:                             ||..|..:...|                    
Zfish   571 QTLH-----------------------------RSSVPDSEAFHL-------------------- 586

  Fly   600 PRPPPPRGSSGGAAQEDFYSSRRQLYEERQSAEPRFIS--------------FQKEGSVGIRLTG 650
            .:|.|          .|.|...|.:||.||...||.::              .:::...|.|:.|
Zfish   587 GKPDP----------YDLYEKSRAIYESRQPLPPRTLTDSTGVEYQEVEVHLLREKTGFGFRILG 641

  Fly   651 GNEA--GIFVTAVQPGSPASLQG-LMPGDKILKVNDMDMNGVTREEAVLFLLSLQDRIDLIVQYC 712
            |:||  .|.:.|:...|||...| |.|||:::.|:.|.:.|                        
Zfish   642 GDEAVQAIVIGAIIENSPAERDGRLRPGDELVSVDRMPVGG------------------------ 682

  Fly   713 KEEYDEVVTNQRGDSFHIKTHFHCDNPSKGEMAFKAGDVFRVIDTLHNGVVGSWQVLKIGRGHQE 777
                              :.|.:                  |||.:|       ...:.|:....
Zfish   683 ------------------RPHRY------------------VIDLMH-------AAARNGQVTLT 704

  Fly   778 MQRGVIPNKSR--AEELATAQFNATKK-----EMNANESRGNFFRRRRSTHRRSKSLSRENWDDV 835
            ::|.|:..:|:  .|...:|..|::.:     .:|...:......|:.|          |.:..|
Zfish   705 VRRRVLTQQSQPCEENGGSANQNSSPRGHAVCPVNLPPTTDVVIHRKES----------EGFGFV 759

  Fly   836 VFSDSISKFPAYERVVLRHPGFVRPVVLFGPVSDLARERLAKDFPDKFSTPLQDDDKSAATSGKC 900
            :.| |:::......:.:.|.  :..::...|.     :|..|         |:..|:..|.:  |
Zfish   760 IIS-SLNRPETTNTITVPHK--IGRIIEGSPA-----DRCGK---------LKVGDRIMAVN--C 805

  Fly   901 R-IVRLSN---IRDVMDRGKHALLDITPNAVDRLNYAQFYPV------VIFLK----TDSKHVIK 951
            : |:.:.:   ::.:.|.|....|.|.|.  :.:|.|...|.      ::..|    |.|....:
Zfish   806 QSIINMPHADIVKLIKDAGLTVTLHIIPE--EDVNGAHSAPTSEKQSPMVAQKHSPQTQSSPATQ 868

  Fly   952 Q---LRHGLPKAAHKS------SKKLLEQCQKLERVWSHIFSTQIALSDEESWYRKLRDSIDLQQ 1007
            |   :.|..|.|.|.|      |..|::|..........:....:::|         :..::..|
Zfish   869 QSPTMAHPSPPAPHPSPATTQPSPLLVDQSPGAPHGSPPLTQGSVSVS---------QAGLESMQ 924

  Fly  1008 SGAVWMSESKPVESLSDDFLFP-MTTSRLSYASSPESDLELSPGPSASLSLGNLPQLVKASSD-- 1069
            :|:. |:::.||       |.| ||..:.:...|..     .|.|| .|.|.:....|||..|  
Zfish   925 TGSA-MTQAAPV-------LDPGMTGIQTTIIGSVP-----VPVPS-QLYLHDTRSEVKARQDVK 975

  Fly  1070 PSIAT------NQDNLDRDRDIIGEGLPPPYTVPYDHAVPANPNRRQTMDSSKYSIYGTNVPPQ- 1127
            |.|..      .|..:|.....:.:...|| |:.|.|. ||      .:|..::||  .:..|| 
Zfish   976 PDICQAAYTDYRQPPVDYRHPPVADYRQPP-TMEYRHP-PA------LIDYRQHSI--ADYRPQD 1030

  Fly  1128 ------QQQPGVGGDTAAVRPQSLYGIN------APDLPPRIDRQSKPGDIPLNTSGSSSRNGTL 1180
                  :.:..|.|...::|....|.::      |.|.|...:.:.:.||..:..:|.|:|:.:.
Zfish  1031 YDYFTVELEKSVKGFGFSIRGGREYKMDLFVLRLAEDGPAVRNGRMRVGDQIIEINGESTRDMSH 1095

  Fly  1181 GRSAQ 1185
            .|:.:
Zfish  1096 ARAIE 1100

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pydNP_001246998.1 PDZ_signaling 249..334 CDD:238492 22/77 (29%)
PDZ_signaling 396..477 CDD:238492 18/83 (22%)
PDZ_signaling 633..710 CDD:238492 21/93 (23%)
SH3_ZO 729..790 CDD:212793 9/62 (15%)
GuKc 831..1007 CDD:214504 33/198 (17%)
ZU5 2263..2351 CDD:279170
magi2bXP_021326360.1 NK <1..>29 CDD:327404
MAGI_u1 35..96 CDD:318800
WW 145..175 CDD:238122
WW 190..219 CDD:306827
PDZ 266..349 CDD:214570 22/79 (28%)
PDZ 451..531 CDD:214570 18/86 (21%)
PDZ 622..708 CDD:214570 25/152 (16%)
PDZ_signaling 743..832 CDD:238492 18/117 (15%)
PDZ_signaling 1034..1114 CDD:238492 13/67 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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