DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir85a and grin2aa

DIOPT Version :9

Sequence 1:NP_649833.1 Gene:Ir85a / 41052 FlyBaseID:FBgn0037630 Length:605 Species:Drosophila melanogaster
Sequence 2:XP_021329529.1 Gene:grin2aa / 563297 ZFINID:ZDB-GENE-070424-129 Length:1460 Species:Danio rerio


Alignment Length:632 Identity:108/632 - (17%)
Similarity:207/632 - (32%) Gaps:201/632 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 EHTGQILKEVTKCDISNQNTPLEAVKDDGILMYMVMITTNISQPLELSLIRKKSAAKHRSHVFLL 127
            |..|.|.:..|.|....:.|.|   ....:..||:.:|.:   ..:||..........:..|.:|
Zfish   305 EEFGDIPEAKTSCYGQMEKTKL---PPSALHKYMMNVTWD---GKDLSFTEDGYQVHPKLVVIVL 363

  Fly   128 VRDAD-TVSDAWMRASFRQFWKIWLLNIVILYWRDGRLNAYRYNPFMDNYLIPVDNKPNEVPTLE 191
            .:|.: .....|...|....:.:|           .|.|::......||:|              
Zfish   364 NKDREWEKMGKWENQSLTLKYPVW-----------PRFNSFGDAETDDNHL-------------- 403

  Fly   192 QLFPKTIPNMQRKPLRMCIYKDDVRAIFWRQGTILGTDGLLAAYVAERLNATMMIT----RPHSY 252
                 ||..::.||.   :..::|                      |||..|.|..    |.|..
Zfish   404 -----TIVTLEEKPF---VIVENV----------------------ERLTGTCMRNSVPCRKHIK 438

  Fly   253 NNHNLSSDICFLEVAKEY-VD----VAMNIRF----------------------LVPDTFRKQA- 289
            :|..........:..|.: :|    :|.|::|                      :|.:...|:| 
Zfish   439 DNTTEGGGTYIKKCCKGFCIDILKKIARNVKFTYDLYLVTNGKHGKKINNVWNGMVGEVVNKKAV 503

  Fly   290 ----ESTVSHTRDD------------LCVIVPKAKTAPTFWNIFRSFGSLVWA-----LILVSVL 333
                ..|::..|.:            :.|:|.::....:.......|.:.||.     |:||:.:
Zfish   504 MAVGSLTINEERSEVIDFSVPFVETGISVMVSRSNGTVSPSAFLEPFSASVWVMMFVMLLLVTAM 568

  Fly   334 VANVFCYILKSEVGRVPMQ----------------LFAGAL---TMPMTQIPPNHSIRLFLIFWL 379
            ...:|.||......|...|                |..|.:   ::|: |.|...:.:..:..|.
Zfish   569 AVFMFEYISPLGFNRNLAQGKDPHGPSFTMGKAVWLLWGLVFNNSVPV-QNPKGTTSKFIVSVWA 632

  Fly   380 YFGLLICSAFKGNLTSMMVFQPYLPDINQLGALARSHYHIIIRPRHVKHIQHFLTLGHKHESRIR 444
            :|.::..:::..||.:.|:.:.:   ::|:..|:...:.   .|........|.|:.:....|  
Zfish   633 FFAVIFLASYTANLAAFMIQEEF---VDQVTGLSDKKFQ---SPYSYSPPFRFGTVPNGSTER-- 689

  Fly   445 EQMLEVSDTQMYEMMRNNDIRFAYLEKYHIARFQVN-SRVHMHLGRPLFHLMNSCLVPFHA---- 504
                        .:.:|......|:.|||  :..|| :.|.:..|:....:.::.::.:.|    
Zfish   690 ------------NIRKNYPDMHQYMVKYH--QTGVNDALVSLKTGKLDAFIYDAAVLNYMAGRDE 740

  Fly   505 -VYIVPYGSPYL----GFLDSLIRSSHEFGFERYWDRIMNSAFIKSGVKVVNRRRGSG------- 557
             ..:|..||.|:    |:..:|.:.|       .|.|.::.|.:    .::    |.|       
Zfish   741 GCKLVTIGSGYIFATTGYGIALQKGS-------LWKRPVDLAIL----AII----GDGEMEELEA 790

  Fly   558 --------NDEPVVLKLQ----HFHAVFALWLVGIGMACIVLAWEHL 592
                    |::..|:..|    :...||.:....:|::.|...||||
Zfish   791 QWLTGICHNEKNEVMSSQLDVDNMAGVFYMLATAMGLSLITFVWEHL 837

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir85aNP_649833.1 None
grin2aaXP_021329529.1 PBP1_iGluR_NMDA_NR2 33..389 CDD:107373 18/100 (18%)
PBP2_iGluR_NMDA_Nr2 400..799 CDD:270436 77/480 (16%)
NMDAR2_C 836..1460 CDD:313729 2/2 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591450
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.740

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