DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir85a and Gria1

DIOPT Version :9

Sequence 1:NP_649833.1 Gene:Ir85a / 41052 FlyBaseID:FBgn0037630 Length:605 Species:Drosophila melanogaster
Sequence 2:NP_113796.1 Gene:Gria1 / 50592 RGDID:621531 Length:907 Species:Rattus norvegicus


Alignment Length:378 Identity:67/378 - (17%)
Similarity:126/378 - (33%) Gaps:104/378 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   272 DVAMNIRFLVPDTFRKQAESTVSHTRD----DLCVIVPK-AKTAPTFWNIFRSFGSLVWALILVS 331
            |||     :.|.|.....|..:..::.    .:.:::.| .|:.|..::........:|..|:.:
  Rat   487 DVA-----VAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFA 546

  Fly   332 VLVANVFCYIL------------------------KSEVGRVPMQLFA-GALTMPMTQIPPNH-S 370
            .:..:|..:::                        .:|.|......|: ||.......|.|.. |
  Rat   547 YIGVSVVLFLVSRFSPYEWHSEEFEEGRDQTTSDQSNEFGIFNSLWFSLGAFMQQGCDISPRSLS 611

  Fly   371 IRLFLIFWLYFGLLICSAFKGNLTSMMVFQPYLPDINQLGALARSHYHIIIRPRHVKHIQHFLTL 435
            .|:....|.:|.|:|.|::..||.:.:..:..:..|.....||:                     
  Rat   612 GRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAK--------------------- 655

  Fly   436 GHKHESRIREQMLEVSDTQMYEMMRNNDI-----RFAYLEKYHIARFQVNS-----RVHMHLGRP 490
                ::.|....||...|:  |..|.:.|     .:.|::....:.|...:     ||....|:.
  Rat   656 ----QTEIAYGTLEAGSTK--EFFRRSKIAVFEKMWTYMKSAEPSVFVRTTEEGMIRVRKSKGKY 714

  Fly   491 LFHL---MNSCL---VPFHAVYI------------VPYGSPYLGFLDSLIRSSHEFGFERYWDRI 537
            .:.|   ||..:   .|...:.:            .|.||.....::..:...:|.|.   .|::
  Rat   715 AYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSALRNPVNLAVLKLNEQGL---LDKL 776

  Fly   538 MNSAFIKSGVKVVNRRRGSG----NDEPVVLKLQHFHAVFALWLVGIGMACIV 586
            .|..:...|      ..|||    .|:...|.|.:...||.:.:.|:|:|.:|
  Rat   777 KNKWWYDKG------ECGSGGGDSKDKTSALSLSNVAGVFYILIGGLGLAMLV 823

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Ir85aNP_649833.1 None
Gria1NP_113796.1 PBP1_iGluR_AMPA_GluR1 26..392 CDD:380613
PBP2_iGluR_AMPA_GluR1 406..787 CDD:270447 55/340 (16%)
Glutamate binding. /evidence=ECO:0000250 492..494 1/1 (100%)