DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir85a and GluRIIE

DIOPT Version :9

Sequence 1:NP_649833.1 Gene:Ir85a / 41052 FlyBaseID:FBgn0037630 Length:605 Species:Drosophila melanogaster
Sequence 2:NP_001036733.1 Gene:GluRIIE / 318623 FlyBaseID:FBgn0051201 Length:897 Species:Drosophila melanogaster


Alignment Length:589 Identity:110/589 - (18%)
Similarity:206/589 - (34%) Gaps:141/589 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 NQNTPLEAVKDDGILMYMVMITTNISQPLELSLIRKKSAAKHRSHVFLLVRDADTVSDAWMRASF 143
            :|.|  |:|:|||......|.|..::..|....|..:...:...|:.::......:         
  Fly   333 SQRT--ESVRDDGSSFKNYMRTLRLTDRLLTGPIYFEGNVRKGYHLDVIELQPSGI--------- 386

  Fly   144 RQFWKIWLLNIVILYWRDGRLNAYRYNPFMDNYLIPV----DNKPNEVPTLEQLFPKTIPNMQRK 204
                      :.:..|.:.|    :|.|   ..|.|.    |:..|.:.....:...::||   |
  Fly   387 ----------VKVGTWDEDR----QYRP---QRLAPTTAQFDSVDNSLANKTFIILLSVPN---K 431

  Fly   205 PLRMCI--YKDDVRAIFWRQGTILGTDGLLAAYVAERL--NATMMITRPHSYNNHNLS---SDIC 262
            |....:  || .:......:|  .|.|  |...:|::|  |.| .:...:.|.::|.|   |...
  Fly   432 PYAQLVETYK-QLEGNSQYEG--YGVD--LIKELADKLGFNFT-FVNGGNDYGSYNKSTNESTGM 490

  Fly   263 FLEVAKEYVDVAMNIRFLVPDTFRKQA-ESTVSHTRDDLCVIVPK-AKTAPTFWNIFRSFGSLVW 325
            ..|:.....|:|  |..|...:.|:|| :.|:......:.::..| .|..|..:.....|...||
  Fly   491 LREIMTGRADLA--ITDLTITSEREQALDFTIPFMNLGIAILYLKPQKATPELFTFMDPFSEEVW 553

  Fly   326 ALILVSVLVANVFCYILKSEVGRV--------------PMQL------------FAGALTMPMTQ 364
            ..:..|.|..::..:||    ||:              |.:|            ..|||....::
  Fly   554 WFLGFSFLGVSLSFFIL----GRLSPSEWDNPYPCIEEPEELENQFTLGNSIWFTTGALLQQGSE 614

  Fly   365 IPPNH-SIRLFLIFWLYFGLLICSAFKGNLTSMMVFQPYLPDINQLGALARSHYHIIIRPRHVKH 428
            |.|.. |.|....||.:|.|::.|::..||.:.:..:.....||.:..||.:...::...:....
  Fly   615 IGPKALSTRTVASFWWFFTLIVVSSYTANLAAFLTIEKPQSLINSVDDLADNKDGVVYGAKKTGS 679

  Fly   429 IQHFLTLGHKHESRIREQMLEVSDTQMYEMMRNNDIRFAYLEKYHIARFQVNSRVHMHLGRPLFH 493
            .::|...  ..|.|.::....:|:...|....|.:         .:.|.:.|:....        
  Fly   680 TRNFFMT--SAEERYKKMNKFMSENPQYLTEDNME---------GVNRVKTNTHYAF-------- 725

  Fly   494 LMNSCLVPFH------------AVYIVPYGS------PYLGFLDSLIRSSHEFGF-----ERYWD 535
            ||.|..:.::            |:....||.      |:.|..::.:....|.|.     .::|:
  Fly   726 LMESTSIEYNTKRECNLKKIGDALDEKGYGIAMRKDWPHRGKFNNALLELQEQGVLEKMKNKWWN 790

  Fly   536 RIMNSAFIKSGVKVVNRRRGSGNDEPVVLKLQHFHAVFALWLVGIGMACI--VLAW----EHLTH 594
            .:        |..:...:..:.:..|  |.:.:...||.:.|||...|.:  :::|    ....|
  Fly   791 EV--------GTGICATKEDAPDATP--LDMNNLEGVFFVLLVGSCCALLYGIISWVLFVMKKAH 845

  Fly   595 NYNL 598
            :|.:
  Fly   846 HYRV 849

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir85aNP_649833.1 None
GluRIIENP_001036733.1 PBP1_iGluR_Kainate 42..396 CDD:107377 13/83 (16%)
ANF_receptor 51..382 CDD:279440 12/50 (24%)
PBP2_iGluR_Kainate 419..790 CDD:270432 77/404 (19%)
Lig_chan 551..824 CDD:278489 53/305 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462849
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.740

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