DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir85a and Grik1

DIOPT Version :9

Sequence 1:NP_649833.1 Gene:Ir85a / 41052 FlyBaseID:FBgn0037630 Length:605 Species:Drosophila melanogaster
Sequence 2:NP_001104587.1 Gene:Grik1 / 29559 RGDID:2732 Length:949 Species:Rattus norvegicus


Alignment Length:736 Identity:133/736 - (18%)
Similarity:231/736 - (31%) Gaps:261/736 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 PL--DLKKSSIVMVKMSQILCKARIKVLFVYFENQTSHEHTGQILKEV--------------TKC 75
            ||  ::|||                |..:|.|:  .|||...:|||::              |..
  Rat   214 PLLKEMKKS----------------KEFYVIFD--CSHETAAEILKQILFMGMMTEYYHYFFTTL 260

  Fly    76 DISNQNTPLEAVKDDGILMYMVMITTNISQPLELSLIRKKS----AAKHRSHVFLL----VRDAD 132
            |:...:  ||..:..|:.|....: .||..|...|:|.|.|    .|..|....||    ..:|.
  Rat   261 DLFALD--LELYRYSGVNMTGFRL-LNIDNPHVSSIIEKWSMERLQAPPRPETGLLDGMMTTEAA 322

  Fly   133 TVSDAWMRASFRQFWKIWLLNIVILYWRDGR-----LNAYRYNP------FMDNYLIPVDNKP-- 184
            .:.||             :..:.|...|..:     |..:|:.|      ||:  ||......  
  Rat   323 LMYDA-------------VYMVAIASHRASQLTVSSLQCHRHKPWRLGPRFMN--LIKEARWDGL 372

  Fly   185 ------NEVPTLEQLFPKTIPNMQRKPLRMC-------IYKDDVRAIFWRQGTILG-TDG----- 230
                  |:...|.:.|...|.:::.:.....       :||...:...|...:.|. |||     
  Rat   373 TGRITFNKTDGLRKDFDLDIISLKEEGTEKASGEVSKHLYKVWKKIGIWNSNSGLNMTDGNRDRS 437

  Fly   231 --LLAAYVAERLNATMMITRPH---------SYNNHNLSSDICFLEVAKEYVDVAMNIRF----- 279
              :..:.....|..|.::..|:         .|.|..... .| |::.||..::   :.|     
  Rat   438 NNITDSLANRTLIVTTILEEPYVMYRKSDKPLYGNDRFEG-YC-LDLLKELSNI---LGFLYDVK 497

  Fly   280 LVPD----------TFRKQAESTVSHTRDDLCV-----------IVPKAK--------------- 308
            ||||          .:....:..:.| |.||.|           ::..:|               
  Rat   498 LVPDGKYGAQNDKGEWNGMVKELIDH-RADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKPN 561

  Fly   309 -TAPTFWNIFRSFGSLVWALILVSVLVANVFCYIL----------------KSEVGRVPMQLF-- 354
             |.|..::........:|..:|::.|..:...:::                .|:|......|.  
  Rat   562 GTNPGVFSFLNPLSPDIWMYVLLACLGVSCVLFVIARFTPYEWYNPHPCNPDSDVVENNFTLLNS 626

  Fly   355 ----AGALTMPMTQIPPNH-SIRLFLIFWLYFGLLICSAFKGNLTSMMVFQPYLPDINQLGALAR 414
                .|||....:::.|.. |.|:....|.:|.|:|.|::..||.:.:..:.....|:....||:
  Rat   627 FWFGVGALMQQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAK 691

  Fly   415 SHYHIIIRPRHVKHIQH-------FLTLGHKHESRIREQMLE-VSDTQMYEMMRNND--IRFAYL 469
            .           ..|::       .:|...|.:....|:|.. :|..|...:::|:|  |:....
  Rat   692 Q-----------TKIEYGAVRDGSTMTFFKKSKISTYEKMWAFMSSRQQSALVKNSDEGIQRVLT 745

  Fly   470 EKYHIARFQVNSRVHMHLGRPLFHLMNSCLVPF------HAVYI------------VPYGSPYLG 516
            ..|.:                   ||.|..:.:      :...|            .|.||||..
  Rat   746 TDYAL-------------------LMESTSIEYVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRD 791

  Fly   517 FLDSLIRSSHEFG-----FERYWDRIMNSAFIKSGVKVVNRRRGSG-----NDEPVVLKLQHFHA 571
            .:...|....|.|     .|::|                   ||:|     :.|...|.:::...
  Rat   792 KITIAILQLQEEGKLHMMKEKWW-------------------RGNGCPEEDSKEASALGVENIGG 837

  Fly   572 VFALWLVGIGMACIVLAWEHL 592
            :|.:...|:.::..|...|.|
  Rat   838 IFIVLAAGLVLSVFVAIGEFL 858

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Ir85aNP_649833.1 None
Grik1NP_001104587.1 Periplasmic_Binding_Protein_Type_1 35..430 CDD:299141 51/251 (20%)
ANF_receptor 53..396 CDD:279440 47/217 (22%)
Periplasmic_Binding_Protein_Type_2 446..815 CDD:304360 69/423 (16%)
Glutamate binding 531..533 0/1 (0%)
Lig_chan 577..846 CDD:278489 53/317 (17%)