DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir85a and Grin2d

DIOPT Version :9

Sequence 1:NP_649833.1 Gene:Ir85a / 41052 FlyBaseID:FBgn0037630 Length:605 Species:Drosophila melanogaster
Sequence 2:XP_038951440.1 Gene:Grin2d / 24412 RGDID:2740 Length:1334 Species:Rattus norvegicus


Alignment Length:586 Identity:102/586 - (17%)
Similarity:210/586 - (35%) Gaps:183/586 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   124 VFLLVRDAD-TVSDAWMRASFRQFWKIWLLNIVILYWRDGRLNAYRYNPFMDNYLIPVDNKPNEV 187
            |..|.||.. .|..:|.:.:.|..:.:|                .||..|:.    |||:..:  
  Rat   386 VISLTRDRTWEVVGSWEQQTLRLKYPLW----------------SRYGRFLQ----PVDDTQH-- 428

  Fly   188 PTLEQLFPKTIPNMQRKPLRMCIYKDDVRAIFWRQGTILGTDGLLAAYVAERLNATMMITRPHS- 251
                    .|:..::.:|..:....|.:      .||.          :.:.:.....:.|.|| 
  Rat   429 --------LTVATLEERPFVIVEPADPI------SGTC----------IRDSVPCRSQLNRTHSP 469

  Fly   252 -----------------------YNNHNLSSDICFLEVAK--EYVDVAMNIRFLVPDTFRKQAES 291
                                   .:....|.|:..:...|  :.:|...|  .::.:.|.::|:.
  Rat   470 PPDAPRPEKRCCKGFCIDILKRLAHTIGFSYDLYLVTNGKHGKKIDGVWN--GMIGEVFYQRADM 532

  Fly   292 -----TVSHTRDD------------LCVIVPKAK--TAPTFWNIF---------RSFGSLVWALI 328
                 |::..|.:            :.|:|.::.  .:|:.:..|         ..:...||.::
  Rat   533 AIGSLTINEERSEIVDFSVPFVETGISVMVARSNGTVSPSAFLAFAWLTPPMSPEPYSPAVWVMM 597

  Fly   329 LV---SVLVANVFCYILKSEVGRVPMQLFAG------------------AL----TMPMTQIPPN 368
            .|   :|:...||.:...|.|| ....|..|                  ||    ::|: :.|..
  Rat   598 FVMCLTVVAVTVFIFEYLSPVG-YNRSLATGKRPGGSTFTIGKSIWLLWALVFNNSVPV-ENPRG 660

  Fly   369 HSIRLFLIFWLYFGLLICSAFKGNLTSMMVFQPYLPDINQLGALARSHYHIIIRPRHVKHIQHFL 433
            .:.::.::.|.:|.::..:::..||.:.|:.:.|   ::.:..|:...:.   ||:.......|.
  Rat   661 TTSKIMVLVWAFFAVIFLASYTANLAAFMIQEEY---VDTVSGLSDRKFQ---RPQEQYPPLKFG 719

  Fly   434 TLGH-KHESRIREQMLEVSDTQMYEMMRNNDIRFAYLEKYHIARFQVNSRVHMHLGRPLFHLMNS 497
            |:.: ..|..||..         |..|.      :|:.:|:..|.: .:...:..|:....:.::
  Rat   720 TVPNGSTEKNIRSN---------YPDMH------SYMVRYNQPRVE-EALTQLKAGKLDAFIYDA 768

  Fly   498 CLVPFHA-----VYIVPYGSPYL----GFLDSLIRSSHEFGFERYWDRIMNSAFIK----SGVKV 549
            .::.:.|     ..:|..||..:    |:..:|.:.|.       |.|.::.|.::    ..:::
  Rat   769 AVLNYMARKDEGCKLVTIGSGKVFATTGYGIALHKGSR-------WKRPIDLALLQFLGDDEIEM 826

  Fly   550 VNRRRGSG---NDEPVV----LKLQHFHAVFALWLVGIGMACIVLAWEHLTH---NYNLAVTKRR 604
            :.|...||   ||:..|    |.:.:...||.:.||.:|::.:|.|||||.:   .:.|..|.|.
  Rat   827 LERLWLSGICHNDKIEVMSSKLDIDNMAGVFYMLLVAMGLSLLVFAWEHLVYWRLRHCLGPTHRM 891

  Fly   605 D 605
            |
  Rat   892 D 892

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir85aNP_649833.1 None
Grin2dXP_038951440.1 PBP1_iGluR_NMDA_NR2 46..410 CDD:380601 7/23 (30%)
PBP2_iGluR_NMDA_Nr2 427..838 CDD:270436 69/469 (15%)
PHA03307 <1125..>1312 CDD:223039
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166350105
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

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