DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir85a and Grik4

DIOPT Version :10

Sequence 1:NP_649833.1 Gene:Ir85a / 41052 FlyBaseID:FBgn0037630 Length:605 Species:Drosophila melanogaster
Sequence 2:NP_036704.1 Gene:Grik4 / 24406 RGDID:2734 Length:956 Species:Rattus norvegicus


Alignment Length:246 Identity:43/246 - (17%)
Similarity:80/246 - (32%) Gaps:66/246 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   196 KTIPNMQRKPLRMCIYKDDVRAIFWRQGTILGTDGLLAAYVAERLNATMMITRPHSYNNHNLSSD 260
            |.:..:.|...::.:..|.|..:....||..|..|.|.|..|:...|.:.||.....        
  Rat   453 KELAEILRFNYKIRLVGDGVYGVPEANGTWTGMVGELIARKADLAVAGLTITAEREK-------- 509

  Fly   261 ICFLEVAKEYVDVAMNIRFLVPDTFRKQAESTVSHTRDDLCVIVPKAKTAPTFWNIFRSFGSLVW 325
              .::.:|.::.:.::|.:.|....|                        |.:::....|...||
  Rat   510 --VIDFSKPFMTLGISILYRVHMGRR------------------------PGYFSFLDPFSPGVW 548

  Fly   326 ALILVSVLVANVFCYILKSEVGRV-PMQLFA---------------------------GALTMPM 362
            ..:|::.|..:...::    |.|: |.:.::                           |.:....
  Rat   549 LFMLLAYLAVSCVLFL----VARLTPYEWYSPHPCAQGRCNLLVNQYSLGNSLWFPVGGFMQQGS 609

  Fly   363 TQIPPNHSIRLFLIFWLYFGLLICSAFKGNLTSMMVFQPYLPDINQLGALA 413
            |..|...|.|.....|..|.|:|.|::..||.:.:..|.....|..:..||
  Rat   610 TIAPRALSTRCVSGVWWAFTLIIISSYTANLAAFLTVQRMEVPIESVDDLA 660

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir85aNP_649833.1 None
Grik4NP_036704.1 Periplasmic_Binding_Protein_type1 24..402 CDD:471960
PBP2_iGluR_kainate_KA1 415..785 CDD:270442 43/246 (17%)
QRL_CxxC_CxxC 863..927 CDD:469521
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 931..956
Blue background indicates that the domain is not in the aligned region.

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