DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir85a and glr-1

DIOPT Version :9

Sequence 1:NP_649833.1 Gene:Ir85a / 41052 FlyBaseID:FBgn0037630 Length:605 Species:Drosophila melanogaster
Sequence 2:NP_498887.2 Gene:glr-1 / 176204 WormBaseID:WBGene00001612 Length:962 Species:Caenorhabditis elegans


Alignment Length:543 Identity:93/543 - (17%)
Similarity:172/543 - (31%) Gaps:177/543 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   156 ILYWRDGRLNAYRYNPFMDNYLIPV-------DNKPNEVPTLEQLFPKTIPNMQRKPLRM----- 208
            :|.||.|       ..|..|..:..       |:|.|:|..|..|....: .::|:.|.|     
 Worm   429 VLAWRQG-------VGFFSNRTVAQHSRKSQNDHKDNQVIVLTNLVAPFV-MIKRECLEMANLTE 485

  Fly   209 ----------CI-----YKDDVRAIFW--RQGTILGT-------DGLLAAYVAERLNATMMITRP 249
                      ||     ..|.:....:  :.||..|:       ||::...::.|.:|.:.....
 Worm   486 CQGNNKFEGFCIDLLKLLADKIEEFNYEIKLGTKAGSKQADGSWDGMIGELLSGRAHAVVASLTI 550

  Fly   250 HSYNNHNLSSDICFLEVAKEYVDVAMNIRFLVPDTFRKQAESTVSHTRDDLCVIVPKAKTAPTFW 314
            :.....       .::.:|.::...::|....||   ||..|..|                    
 Worm   551 NQERER-------VVDFSKPFMTTGISIMIKKPD---KQEFSVFS-------------------- 585

  Fly   315 NIFRSFGSLVWALILVSVLVANVFCYILK---------SEVGRVPMQLFAGALTMP--------- 361
             ..:...:.:|..|:.:.:..:|..:::.         .|..|       |..|:.         
 Worm   586 -FMQPLSTEIWMYIIFAYIGVSVVIFLVSRFSPYEWRVEETSR-------GGFTISNDFSVYNCL 642

  Fly   362 -------MTQ----IPPNHSIRLFLIFWLYFGLLICSAFKGNLTSMMVFQPYLPDINQLGALARS 415
                   |.|    :|.:.|.|:....|.:|.::|.|::..||.:.:..:.....|..:..||:.
 Worm   643 WFTLAAFMQQGTDILPRSISGRIASSAWWFFTMIIVSSYTANLAAFLTLEKMQAPIESVEDLAKQ 707

  Fly   416 HYHIIIRPRHVKHIQHFLTLGHKHESRIREQMLEVSDTQMYEMMRNNDIRFAYLEK----YHIAR 476
                       ..|::.:..|....|     ..:.|..|:|:.|      :.|:|.    ..:|.
 Worm   708 -----------SKIKYGIQGGGSTAS-----FFKYSSVQIYQRM------WRYMESQVPPVFVAS 750

  Fly   477 FQVN-SRVHMHLGRPLFHL------MNSCLVPFHAVYI------------VPYGSPYLGFLDSLI 522
            :... .||..|.||..|.|      ..:...|...:.:            .|:||.:...::..|
 Worm   751 YAEGIERVRSHKGRYAFLLEATANEYENTRKPCDTMKVGANLNSIGYGIATPFGSDWKDHINLAI 815

  Fly   523 RSSHEFG----FERYW--DRIMNSAFIKSGVKVVNRRRGSGNDEPVVLKLQHFHAVFALWLVGIG 581
            .:..|.|    .|..|  ||....|    |:.|        :.....|.|.....:|.:.:.|:.
 Worm   816 LALQERGELKKLENKWWYDRGQCDA----GITV--------DGSSASLNLSKVAGIFYILMGGMV 868

  Fly   582 MACIVLAWEHLTHNYNLAVTKRR 604
            ::.:....|.|   |...:..|:
 Worm   869 ISMLAALGEFL---YRSRIEARK 888

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir85aNP_649833.1 None
glr-1NP_498887.2 PBP1_iGluR_AMPA 10..439 CDD:107375 4/16 (25%)
ANF_receptor 44..417 CDD:279440
Periplasmic_Binding_Protein_Type_2 457..832 CDD:304360 71/435 (16%)
Lig_chan 593..867 CDD:278489 55/314 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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