DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir85a and Grin3b

DIOPT Version :9

Sequence 1:NP_649833.1 Gene:Ir85a / 41052 FlyBaseID:FBgn0037630 Length:605 Species:Drosophila melanogaster
Sequence 2:XP_006513350.1 Gene:Grin3b / 170483 MGIID:2150393 Length:1138 Species:Mus musculus


Alignment Length:580 Identity:106/580 - (18%)
Similarity:193/580 - (33%) Gaps:183/580 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   138 WMRASFR----QFWKIWLLN---------IVILYWRDGRLN------AYRY-------------- 169
            |:..|.:    :.:|:|.|.         ..:..|:||:|:      |.|.              
Mouse   435 WVAGSSQVHVSRHFKVWSLRRDPLGAPAWATVGSWQDGQLDFQPGAAALRVPSPSGTQARPKLRV 499

  Fly   170 -----NPFM------DNYLIP-----VDNKPNEVPTLEQLFPKTIPNMQRKPLRMCIY------- 211
                 :||:      ::...|     :|...|:...|:.||.........:.||.|.|       
Mouse   500 VTLVEHPFVFTRESDEDGQCPAGQLCLDPGTNDSARLDALFTALENGSVPRTLRRCCYGYCIDLL 564

  Fly   212 ---KDDVRAIF-------WRQGTILGTDGLLAAYVAERL--NATMMITRPHSYNNHNLSSDICFL 264
               .:|:...|       .:.|.:  .||.....|.:.|  .|.|.:|   |::.::..|.:   
Mouse   565 ERLAEDLAFDFELYIVGDGKYGAL--RDGRWTGLVGDLLAGRAHMAVT---SFSINSARSQV--- 621

  Fly   265 EVAKEYVDVAMNIRFLVPDTFRKQAESTVSHTRDDLCVIVPKAKTAPTFWNIFRSFGSLVWALIL 329
                        :.|..|  |...:...:..|||....|  .|...|..|:        :|..:.
Mouse   622 ------------VDFTSP--FFSTSLGIMVRTRDTASPI--GAFMWPLHWS--------MWVGVF 662

  Fly   330 VSVLVANVF--CYILKSEVGRVP-------MQLFAGALTM---------PMTQIPPNHSIRLFLI 376
            .::.:..:|  .|..:|..|..|       :..::.||.:         ..::.|...:.|..:.
Mouse   663 AALHLTALFLTLYEWRSPYGLTPRGRNRGTVFSYSSALNLCYAILFGRTVSSKTPKCPTGRFLMN 727

  Fly   377 FWLYFGLLICSAFKGNLTSMMVFQPYLPDINQLGALARSHYHIIIRPRHVKHIQHFLTLGHKHES 441
            .|..|.||:.|::..||.::||......:::.            |....:.|.......|...||
Mouse   728 LWAIFCLLVLSSYTANLAAVMVGDKTFEELSG------------IHDPKLHHPSQGFRFGTVWES 780

  Fly   442 RIREQMLEVSDTQMYEMMRNNDIRF----------------AYLEKYHIARFQVNSRVHMHL--- 487
            . .|..::.|..:|:..||.:....                |::....:..::|:......|   
Mouse   781 S-AEAYIKASFPEMHAHMRRHSAPTTPHGVAMLTSDPPKLNAFIMDKSLLDYEVSIDADCKLLTV 844

  Fly   488 GRPLFHL--------MNSCLVPFHAVYIVPYGSPYLGFLDSLIRSSHEFGFERYWDRIMNSAFIK 544
            |:| |.:        .||.|....:.:|..|.|.  ||:|.|    |:     .|.::     :.
Mouse   845 GKP-FAIEGYGIGLPQNSPLTSNLSEFISRYKSS--GFIDLL----HD-----KWYKM-----VP 892

  Fly   545 SGVKVVNRRRGSGNDEPVVLKLQHFHAVFALWLVGIGMACIVLAWEHLTHNYNLAVTKRR 604
            .|.:|.      ...|.:.:.:.|...:|.|..:|:|.|.:....||:.  |.|.:.:.|
Mouse   893 CGKRVF------AVTETLQMGVYHLSGLFVLLCLGLGSALLTSLGEHVF--YRLVLPRIR 944

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir85aNP_649833.1 None
Grin3bXP_006513350.1 PBP1_iGluR_NMDA_NR3 141..481 CDD:380600 9/45 (20%)
PBP2_iGluR_NMDA_Nr3 494..888 CDD:270438 80/450 (18%)
Lig_chan 656..922 CDD:365843 53/309 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846611
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.830

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