DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir85a and Grin2b

DIOPT Version :9

Sequence 1:NP_649833.1 Gene:Ir85a / 41052 FlyBaseID:FBgn0037630 Length:605 Species:Drosophila melanogaster
Sequence 2:NP_001350679.1 Gene:Grin2b / 14812 MGIID:95821 Length:1482 Species:Mus musculus


Alignment Length:586 Identity:110/586 - (18%)
Similarity:209/586 - (35%) Gaps:175/586 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    90 DGILMYMVMITTNISQPL-ELSLIRKKSAAKHRSH---VF---LLVRDADTVSDAWMRASFRQ-F 146
            |||    .:|||..|..| |.|.|.:..::.:.:|   ::   :|.|....|:......||.: .
Mouse   295 DGI----AIITTAASDMLSEHSFIPEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGRNLSFSEDG 355

  Fly   147 WKIWLLNIVILY-----------WRDGRLN-AYRYNPFM--------DNYL--IPVDNKP----- 184
            :::....::||.           |:|..|. .|...|.|        |::|  :.::..|     
Mouse   356 YQMHPKLVIILLNKERKWERVGKWKDKSLQMKYYVWPRMCPETEEQEDDHLSIVTLEEAPFVIVE 420

  Fly   185 -----------NEVPTLEQLFPKTIPNMQRKPLRMC-------IYKDDVRAIFWRQGTILGTDGL 231
                       |.||..:::..:...:.:...::.|       |.|...:::.:.....|.|:| 
Mouse   421 SVDPLSGTCMRNTVPCQKRIISENKTDEEPGYIKKCCKGFCIDILKKISKSVKFTYDLYLVTNG- 484

  Fly   232 LAAYVAERLNATM--MITRPHSYNNHNLSSDICFLEVAKEYVDVAMNIRFLVP------DTFRKQ 288
               ...:::|.|.  ||........:.....:...|...|.||      |.||      .....:
Mouse   485 ---KHGKKINGTWNGMIGEVVMKRAYMAVGSLTINEERSEVVD------FSVPFIETGISVMVSR 540

  Fly   289 AESTVSHTRDDLCVIVPKAKTAPTFWNIFRSFGSLVWALILVSVLVAN---VFCYILKSEV---- 346
            :..|||          |.|...|        |.:.||.::.|.:|:.:   ||.:...|.|    
Mouse   541 SNGTVS----------PSAFLEP--------FSADVWVMMFVMLLIVSAVAVFVFEYFSPVGYNR 587

  Fly   347 ----GRVP----------MQLFAGAL---TMPMTQIPPNHSIRLFLIFWLYFGLLICSAFKGNLT 394
                ||.|          :.|..|.:   ::|: |.|...:.::.:..|.:|.::..:::..||.
Mouse   588 CLADGREPGGPSFTIGKAIWLLWGLVFNNSVPV-QNPKGTTSKIMVSVWAFFAVIFLASYTANLA 651

  Fly   395 SMMVFQPYLPDINQLGALARSHYHIIIRPRHVKHIQHFLTLGH-KHESRIREQMLEVSDTQMYEM 458
            :.|:.:.|   ::|:..|:...:.   ||........|.|:.: ..|..||....|:        
Mouse   652 AFMIQEEY---VDQVSGLSDKKFQ---RPNDFSPPFRFGTVPNGSTERNIRNNYAEM-------- 702

  Fly   459 MRNNDIRFAYLEKYHIARFQVNSRVHMHLGRPLFHLMNSCLVPFHA-----VYIVPYGSPYLGFL 518
                   .||:.|:: .|...::.:.:..|:....:.::.::.:.|     ..:|..||      
Mouse   703 -------HAYMGKFN-QRGVDDALLSLKTGKLDAFIYDAAVLNYMAGRDEGCKLVTIGS------ 753

  Fly   519 DSLIRSSHEFGF----ERYWDRIMNSAFIKSGVKVVNRRRGSGNDEPVVLKLQHFHAVFALWLVG 579
             ..:.:|..:|.    :..|.|.::.|.:        :..|.|..|.:.          ||||.|
Mouse   754 -GKVFASTGYGIAIQKDSGWKRQVDLAIL--------QLFGDGEMEELE----------ALWLTG 799

  Fly   580 I 580
            |
Mouse   800 I 800

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir85aNP_649833.1 None
Grin2bNP_001350679.1 PBP1_iGluR_NMDA_NR2 33..388 CDD:380601 22/96 (23%)
PBP2_iGluR_NMDA_Nr2 403..803 CDD:270436 85/474 (18%)
NMDAR2_C 840..1482 CDD:402274
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846447
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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