DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir85a and Grik1

DIOPT Version :9

Sequence 1:NP_649833.1 Gene:Ir85a / 41052 FlyBaseID:FBgn0037630 Length:605 Species:Drosophila melanogaster
Sequence 2:XP_006522977.1 Gene:Grik1 / 14805 MGIID:95814 Length:949 Species:Mus musculus


Alignment Length:711 Identity:127/711 - (17%)
Similarity:224/711 - (31%) Gaps:243/711 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 KVLFVYFENQTSHEHTGQILKEV--------------TKCDISNQNTPLEAVKDDGILMYMVMIT 100
            |..:|.|:  .|||...:|||::              |..|:...:  ||..:..|:.|....: 
Mouse   223 KEFYVIFD--CSHETAAEILKQILFMGMMTEYYHYFFTTLDLFALD--LELYRYSGVNMTGFRL- 282

  Fly   101 TNISQPLELSLIRKKS----AAKHRSHVFLL----VRDADTVSDAWMRASFRQFWKIWLLNIVIL 157
            .||..|...|:|.|.|    .|..|....||    ..:|..:.||             :..:.|.
Mouse   283 LNIDNPHVSSIIEKWSMERLQAPPRPETGLLDGVMTTEAALMYDA-------------VYMVAIA 334

  Fly   158 YWRDGR-----LNAYRYNP------FMDNYLIPVDNKP--------NEVPTLEQLFPKTIPNMQR 203
            ..|..:     |..:|:.|      ||:  ||......        |:...|.:.|...|.:::.
Mouse   335 SHRASQLTVSSLQCHRHKPWRLGPRFMN--LIKEARWDGLTGRITFNKTDGLRKDFDLDIISLKE 397

  Fly   204 KPLRMC-------IYKDDVRAIFWRQGTILG-TDG-------LLAAYVAERLNATMMITRPH--- 250
            :.....       :||...:...|...:.|. |||       :..:.....|..|.::..|:   
Mouse   398 EGTEKASGEVSKHLYKVWKKIGIWNSNSGLNMTDGNRDRSNNITDSLANRTLIVTTILEEPYVMY 462

  Fly   251 ------SYNNHNLSSDICFLEVAKEYVDVAMNIRF-----LVPD----------TFRKQAESTVS 294
                  .|.|..... .| |::.||..::   :.|     ||||          .:....:..:.
Mouse   463 RKSDKPLYGNDRFEG-YC-LDLLKELSNI---LGFLYDVKLVPDGKYGAQNDKGEWNGMVKELID 522

  Fly   295 HTRDDLCV-----------IVPKAK----------------TAPTFWNIFRSFGSLVWALILVSV 332
            | |.||.|           ::..:|                |.|..::........:|..:|::.
Mouse   523 H-RADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYVLLAC 586

  Fly   333 LVANVFCYIL----------------KSEVGRVPMQLF------AGALTMPMTQIPPNH-SIRLF 374
            |..:...:::                .|:|......|.      .|||....:::.|.. |.|:.
Mouse   587 LGVSCVLFVIARFTPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSELMPKALSTRIV 651

  Fly   375 LIFWLYFGLLICSAFKGNLTSMMVFQPYLPDINQLGALARSHYHIIIRPRHVKHIQH-------F 432
            ...|.:|.|:|.|::..||.:.:..:.....|:....||:.           ..|::       .
Mouse   652 GGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQ-----------TKIEYGAVRDGST 705

  Fly   433 LTLGHKHESRIREQMLE-VSDTQMYEMMRNND--IRFAYLEKYHIARFQVNSRVHMHLGRPLFHL 494
            :|...|.:....|:|.. :|..|...:::|:|  |:......|.:                   |
Mouse   706 MTFFKKSKISTYEKMWAFMSSRQQSALVKNSDEGIQRVLTTDYAL-------------------L 751

  Fly   495 MNSCLVPF------HAVYI------------VPYGSPYLGFLDSLIRSSHEFG-----FERYWDR 536
            |.|..:.:      :...|            .|.||||...:...|....|.|     .|::|  
Mouse   752 MESTSIEYVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWW-- 814

  Fly   537 IMNSAFIKSGVKVVNRRRGSG-----NDEPVVLKLQHFHAVFALWLVGIGMACIVLAWEHL 592
                             ||:|     :.|...|.:::...:|.:...|:.::..|...|.:
Mouse   815 -----------------RGNGCPEEDSKEASALGVENIGGIFIVLAAGLVLSVFVAIGEFI 858

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir85aNP_649833.1 None
Grik1XP_006522977.1 PBP1_iGluR_Kainate 38..431 CDD:380605 46/227 (20%)
Periplasmic_Binding_Protein_Type_2 446..815 CDD:389745 69/423 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846560
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

Return to query results.
Submit another query.