DRSC/TRiP Functional Genomics Resources

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Protein Alignment M1BP and ZNF28

DIOPT Version :9

Sequence 1:NP_649825.1 Gene:M1BP / 41042 FlyBaseID:FBgn0037621 Length:418 Species:Drosophila melanogaster
Sequence 2:NP_008900.3 Gene:ZNF28 / 7576 HGNCID:13073 Length:718 Species:Homo sapiens


Alignment Length:167 Identity:58/167 - (34%)
Similarity:87/167 - (52%) Gaps:4/167 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly   251 YICEQCGNHIKGRMAFELHCRRHRGDKQFGCELCQSRFCTTSELKRHMRKHTGERPFACKYCGRC 315
            |.|.:||.....:.....|.|.|..:|.:.||.|...|...|.|:||.|.||||:|:.||.|.:.
Human   439 YKCNECGKVFNQQSTLARHHRLHTAEKPYKCEECDKVFRCKSHLERHRRIHTGEKPYKCKVCDKA 503

  Fly   316 FTDYTTRVKHERTHTNERPYVCGTCGKAFTTGYILKNHMLIHSGERAYRCELCDKSFMLPTHLST 380
            |...:...:|:|.||.|:||:|..|||.|:|...|..|..:|:.|:.|:||.|:|.|...:|:..
Human   504 FRSDSCLTEHQRVHTGEKPYMCNECGKVFSTKANLACHHKLHTAEKPYKCEECEKVFSRKSHMER 568

  Fly   381 HFRSGVHKRHLEKAEMKQVLEQEQKRELKEEEEDSLH 417
            |.|  :|..  ||....:|.::..:|:....:...:|
Human   569 HRR--IHTG--EKPYKCKVCDKAFRRDSHLAQHQRVH 601

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
M1BPNP_649825.1 zf-AD 13..84 CDD:214871
C2H2 Zn finger 253..273 CDD:275368 5/19 (26%)
COG5048 276..>331 CDD:227381 22/54 (41%)
C2H2 Zn finger 281..301 CDD:275368 9/19 (47%)
zf-H2C2_2 293..317 CDD:290200 12/23 (52%)
C2H2 Zn finger 309..329 CDD:275368 6/19 (32%)
zf-H2C2_2 324..346 CDD:290200 12/21 (57%)
C2H2 Zn finger 337..357 CDD:275368 8/19 (42%)
zf-H2C2_2 350..372 CDD:290200 9/21 (43%)
C2H2 Zn finger 365..383 CDD:275368 7/17 (41%)
ZNF28NP_008900.3 KRAB 8..>48 CDD:214630
KRAB 8..47 CDD:279668
COG5048 <143..373 CDD:227381
C2H2 Zn finger 217..237 CDD:275368
C2H2 Zn finger 245..265 CDD:275368
COG5048 267..655 CDD:227381 58/167 (35%)
C2H2 Zn finger 273..293 CDD:275368
C2H2 Zn finger 301..321 CDD:275368
C2H2 Zn finger 329..349 CDD:275368
zf-H2C2_2 341..366 CDD:290200
C2H2 Zn finger 357..377 CDD:275368
zf-H2C2_2 370..394 CDD:290200
C2H2 Zn finger 385..405 CDD:275368
zf-H2C2_2 397..422 CDD:290200
C2H2 Zn finger 413..433 CDD:275368
zf-H2C2_2 425..450 CDD:290200 4/10 (40%)
C2H2 Zn finger 441..461 CDD:275368 5/19 (26%)
C2H2 Zn finger 469..489 CDD:275368 9/19 (47%)
zf-H2C2_2 481..506 CDD:290200 13/24 (54%)
C2H2 Zn finger 497..517 CDD:275368 6/19 (32%)
zf-H2C2_2 510..534 CDD:290200 12/23 (52%)
C2H2 Zn finger 525..545 CDD:275368 8/19 (42%)
C2H2 Zn finger 553..573 CDD:275368 8/21 (38%)
zf-H2C2_2 565..590 CDD:290200 7/28 (25%)
C2H2 Zn finger 581..601 CDD:275368 2/19 (11%)
zf-H2C2_2 593..618 CDD:290200 1/9 (11%)
C2H2 Zn finger 609..629 CDD:275368
zf-H2C2_2 621..646 CDD:290200
C2H2 Zn finger 637..657 CDD:275368
C2H2 Zn finger 665..685 CDD:275368
zf-H2C2_2 677..702 CDD:290200
C2H2 Zn finger 693..713 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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