DRSC/TRiP Functional Genomics Resources

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Protein Alignment M1BP and trem

DIOPT Version :9

Sequence 1:NP_649825.1 Gene:M1BP / 41042 FlyBaseID:FBgn0037621 Length:418 Species:Drosophila melanogaster
Sequence 2:NP_650861.1 Gene:trem / 42392 FlyBaseID:FBgn0038767 Length:439 Species:Drosophila melanogaster


Alignment Length:442 Identity:117/442 - (26%)
Similarity:189/442 - (42%) Gaps:62/442 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 CRVCAKYASNKRS--PKLF-ERSNTKMIDNIEALTGLRLENYGCLPDQICECCSMELASAVKLRE 74
            ||||....|....  ..:| |.::|::...:....|:.:......||::|..|...|....|.|.
  Fly    12 CRVCLNNPSEGEELLHDIFSETASTRLDQMLHICAGIPVSLDDNFPDKMCSKCVRCLRLCYKFRL 76

  Fly    75 RCIAAQRELLLGLTEEQRQGISAFYRAAVMGE-DIVQTVKTPDDDEVYATYQEIVLEEPKEEID- 137
            .|..:.:.::..|..|.....:|       || |::...:....:.|..::     |:...::| 
  Fly    77 TCQRSHQHIMDMLDREASNANAA-------GEGDLLSIAEDLSVESVLKSW-----EDYASQLDG 129

  Fly   138 DTKVEYDN-------TYYEVAEGHAGEDDAASLIEEADYDSIMAEDEEQQQTLELDEDTELIVGD 195
            ..|||.:.       ||  |.|.  |:.|..::.:..|....:..:.|:.:|....|:.||:..:
  Fly   130 GMKVEGEEDQQHQVITY--VVED--GDTDDTNMFDVHDPTQPVPNEIEEAETYAEYEEYELLTNE 190

  Fly   196 VNDAYVYDS-------------DDEVA--VLDNVLDDEYEHENIVVKKCSLPPK---------PK 236
            .:.....:.             ::|:|  :||:  |::|:..:...:||....:         ||
  Fly   191 NSPEIAQEKGSTGTDVATEEPPEEEIAEDILDS--DEDYDPTHAKPEKCDRSGRKPVAYHKNSPK 253

  Fly   237 V----RSDDARRRGTGGVYICEQCGNHIKGRMAFELHCRRHRGDKQFGCELCQSRFCTTSELKRH 297
            |    :....:.|.....|||:.|||....:.....|.:.|.|.|...||:|...|....:|.||
  Fly   254 VETFKKKVGRKPRNKLSTYICDVCGNIYPTQARLTEHMKFHSGVKPHECEICGRGFVQNQQLVRH 318

  Fly   298 MRKHTGERPFACKYCGRCFTDYTTRVKHERTHTNERPYVCGTCGKAFTTGYILKNHMLIHSGERA 362
            |..|||.||:.|.||...|.|.:|:.||.|.||.||||||..|.:.||....||.|.:||:||:.
  Fly   319 MNTHTGNRPYKCNYCPAAFADRSTKTKHHRIHTKERPYVCDVCSRTFTYSDNLKFHKMIHTGEKP 383

  Fly   363 YRCELCDKSFM----LPTHLSTHFRSGVHKRHLEKAEMKQVLEQEQKRELKE 410
            :.|:||.|.|:    |..|..||.|....:...|::...:.::.|....|.|
  Fly   384 HVCDLCGKGFVKAYKLRLHRETHNRRITWRNDAEESTKAEDVKGETPEFLNE 435

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
M1BPNP_649825.1 zf-AD 13..84 CDD:214871 17/73 (23%)
C2H2 Zn finger 253..273 CDD:275368 5/19 (26%)
COG5048 276..>331 CDD:227381 24/54 (44%)
C2H2 Zn finger 281..301 CDD:275368 8/19 (42%)
zf-H2C2_2 293..317 CDD:290200 12/23 (52%)
C2H2 Zn finger 309..329 CDD:275368 9/19 (47%)
zf-H2C2_2 324..346 CDD:290200 13/21 (62%)
C2H2 Zn finger 337..357 CDD:275368 7/19 (37%)
zf-H2C2_2 350..372 CDD:290200 11/21 (52%)
C2H2 Zn finger 365..383 CDD:275368 9/21 (43%)
tremNP_650861.1 zf-AD 11..87 CDD:214871 17/74 (23%)
COG5048 <264..411 CDD:227381 61/146 (42%)
C2H2 Zn finger 274..294 CDD:275368 5/19 (26%)
zf-H2C2_2 287..311 CDD:290200 8/23 (35%)
C2H2 Zn finger 302..322 CDD:275368 8/19 (42%)
zf-H2C2_2 315..338 CDD:290200 12/22 (55%)
C2H2 Zn finger 330..350 CDD:275368 9/19 (47%)
zf-H2C2_2 345..367 CDD:290200 13/21 (62%)
C2H2 Zn finger 358..378 CDD:275368 7/19 (37%)
zf-H2C2_2 370..394 CDD:290200 11/23 (48%)
C2H2 Zn finger 386..406 CDD:275368 7/19 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 62 1.000 Inparanoid score I2531
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.960

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