DRSC/TRiP Functional Genomics Resources

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Protein Alignment ranshi and ZNF254

DIOPT Version :9

Sequence 1:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster
Sequence 2:NP_975011.3 Gene:ZNF254 / 9534 HGNCID:13047 Length:659 Species:Homo sapiens


Alignment Length:362 Identity:90/362 - (24%)
Similarity:139/362 - (38%) Gaps:78/362 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 CRTCGKRTNAERSLNIFEKR--------------------NQTTLEHIKLLTGAVLKNC------ 44
            |..||:..|  ||.|:...:                    :.|..||.|:.|......|      
Human   268 CEECGEAFN--RSSNLTTHKIIHTGEKPYKCEECGKAFIWSSTLTEHKKIHTRKKPYKCEECGKA 330

  Fly    45 ----STLPNR----------LCASCQTCLQQAISFRERCLEVQRELLHSQDDEDFLRICQESPKS 95
                |||...          .|..|.....|:.:.      ...:::|:.:..   ..|.|..|:
Human   331 FIWSSTLTRHKRMHTGEKPYKCEECGKAFSQSSTL------TTHKIIHTGEKR---YKCLECGKA 386

  Fly    96 VLEQEELEL-DLAEISIEVERLDDLNEGPIQSSGFKVEDILNESKINEDEPNNEDDIDYSEMDYL 159
            ..:...|.. .:..:..::.:.::..:|..:||......|::.                .|..|.
Human   387 FKQLSTLTTHKIIHVGEKLYKCEECGKGFNRSSNLTTHKIIHT----------------GEKPYK 435

  Fly   160 IYESDTEVDAKQELKSDSENPKKRRNRRNPRDSNRTFFCEECGNHIKDRISFILHCKRHRGVKEF 224
            ..|.     .|..:.|.:....||.:.|     .:.:.|||||.......:...|.:.|.|.|.:
Human   436 CEEC-----GKAFIWSSTLTKHKRIHTR-----EKPYKCEECGKAFIWSSTLTRHKRMHTGEKPY 490

  Fly   225 GCEFCEDRFCTPAELKRHIRKHTGEKPFKCRHCSRSFSDYSTRLKHERTHTNERPFVCKECNNAF 289
            .||.|...|...:.|..|...||||||:||..|.::|:..||..||:..||.|:|:.|::|..||
Human   491 KCEECGKSFSQSSTLTTHKIIHTGEKPYKCEECGKAFNWSSTLTKHKIIHTEEKPYKCEKCGKAF 555

  Fly   290 TTSYILKNHMLVHTGEKAFRCDLCDKLFSRYTHLTTH 326
            ..|.||.||..:|||||.::|:.|.|.|:|.:..|.|
Human   556 KQSSILTNHKRIHTGEKPYKCEECGKSFNRSSTFTKH 592

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ranshiNP_649824.1 zf-AD 5..77 CDD:214871 19/110 (17%)
C2H2 Zn finger 198..218 CDD:275368 6/19 (32%)
COG5048 222..>276 CDD:227381 22/53 (42%)
C2H2 Zn finger 226..246 CDD:275368 6/19 (32%)
zf-H2C2_2 238..262 CDD:290200 11/23 (48%)
C2H2 Zn finger 254..274 CDD:275368 7/19 (37%)
zf-H2C2_2 269..291 CDD:290200 10/21 (48%)
C2H2 Zn finger 282..302 CDD:275368 9/19 (47%)
zf-H2C2_2 295..319 CDD:290200 12/23 (52%)
C2H2 Zn finger 310..328 CDD:275368 7/17 (41%)
ZNF254NP_975011.3 KRAB 13..73 CDD:214630
C2H2 Zn finger 184..204 CDD:275368
C2H2 Zn finger 212..260 CDD:275368
COG5048 264..625 CDD:227381 90/362 (25%)
C2H2 Zn finger 268..288 CDD:275368 7/21 (33%)
C2H2 Zn finger 296..316 CDD:275368 4/19 (21%)
C2H2 Zn finger 324..344 CDD:275368 4/19 (21%)
C2H2 Zn finger 352..372 CDD:275368 3/25 (12%)
C2H2 Zn finger 380..400 CDD:275368 4/19 (21%)
C2H2 Zn finger 408..428 CDD:275368 4/19 (21%)
C2H2 Zn finger 436..456 CDD:275368 5/24 (21%)
C2H2 Zn finger 464..484 CDD:275368 6/19 (32%)
C2H2 Zn finger 492..512 CDD:275368 6/19 (32%)
C2H2 Zn finger 520..540 CDD:275368 7/19 (37%)
C2H2 Zn finger 548..568 CDD:275368 9/19 (47%)
C2H2 Zn finger 576..596 CDD:275368 7/17 (41%)
C2H2 Zn finger 604..624 CDD:275368
C2H2 Zn finger 632..652 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
00.000

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