DRSC/TRiP Functional Genomics Resources

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Protein Alignment ranshi and ZNF486

DIOPT Version :9

Sequence 1:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster
Sequence 2:NP_443084.2 Gene:ZNF486 / 90649 HGNCID:20807 Length:463 Species:Homo sapiens


Alignment Length:208 Identity:72/208 - (34%)
Similarity:102/208 - (49%) Gaps:11/208 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   130 KVEDILNESKINEDEPNNEDDIDYSEMDYLIYESDTEVDAKQ----ELKSDSENPKKRRNRRN-- 188
            ||....:.||.::.....:..:.|.|.|....:|.|....|:    |.....|...|..||.:  
Human   161 KVFHQFSNSKRHKRRHTEKKPLKYIEGDKAFNQSSTHTTHKKIDTGEKPYKCEECGKAFNRSSHL 225

  Fly   189 -----PRDSNRTFFCEECGNHIKDRISFILHCKRHRGVKEFGCEFCEDRFCTPAELKRHIRKHTG 248
                 .....:.:.|||||...|...||..|.|.|.|.|.:.||.|...|..|..|..|...|||
Human   226 TTHKITHTREKPYKCEECGKVFKYFSSFTTHKKIHSGEKPYICEECGKAFMYPYTLTTHKIIHTG 290

  Fly   249 EKPFKCRHCSRSFSDYSTRLKHERTHTNERPFVCKECNNAFTTSYILKNHMLVHTGEKAFRCDLC 313
            |:|:||:.|.::|:..:|...|::.||.|:|:.|.:|..||.:|.||..|..:|||||.::|:.|
Human   291 EQPYKCKECDKAFNHPATLSSHKKIHTGEKPYTCDKCGKAFISSSILSKHEKIHTGEKPYKCEEC 355

  Fly   314 DKLFSRYTHLTTH 326
            .|.|:|.:|||.|
Human   356 GKAFTRSSHLTMH 368

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ranshiNP_649824.1 zf-AD 5..77 CDD:214871
C2H2 Zn finger 198..218 CDD:275368 10/19 (53%)
COG5048 222..>276 CDD:227381 20/53 (38%)
C2H2 Zn finger 226..246 CDD:275368 7/19 (37%)
zf-H2C2_2 238..262 CDD:290200 10/23 (43%)
C2H2 Zn finger 254..274 CDD:275368 5/19 (26%)
zf-H2C2_2 269..291 CDD:290200 9/21 (43%)
C2H2 Zn finger 282..302 CDD:275368 8/19 (42%)
zf-H2C2_2 295..319 CDD:290200 11/23 (48%)
C2H2 Zn finger 310..328 CDD:275368 9/17 (53%)
ZNF486NP_443084.2 KRAB 13..71 CDD:214630
KRAB 15..52 CDD:279668
C2H2 Zn finger 155..176 CDD:275368 4/14 (29%)
COG5048 188..>463 CDD:227381 66/181 (36%)
C2H2 Zn finger 188..204 CDD:275368 4/15 (27%)
C2H2 Zn finger 212..232 CDD:275368 4/19 (21%)
zf-H2C2_2 224..249 CDD:290200 5/24 (21%)
C2H2 Zn finger 240..260 CDD:275368 10/19 (53%)
C2H2 Zn finger 268..288 CDD:275368 7/19 (37%)
zf-H2C2_2 281..305 CDD:290200 11/23 (48%)
C2H2 Zn finger 296..316 CDD:275368 5/19 (26%)
zf-H2C2_2 309..333 CDD:290200 9/23 (39%)
C2H2 Zn finger 324..344 CDD:275368 8/19 (42%)
zf-H2C2_2 337..361 CDD:290200 11/23 (48%)
C2H2 Zn finger 352..372 CDD:275368 9/17 (53%)
zf-H2C2_2 364..388 CDD:290200 4/5 (80%)
C2H2 Zn finger 380..400 CDD:275368
zf-H2C2_2 395..417 CDD:290200
C2H2 Zn finger 408..428 CDD:275368
zf-H2C2_2 420..444 CDD:290200
C2H2 Zn finger 436..456 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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