DRSC/TRiP Functional Genomics Resources

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Protein Alignment ranshi and ZNF397

DIOPT Version :9

Sequence 1:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster
Sequence 2:XP_006722621.1 Gene:ZNF397 / 84307 HGNCID:18818 Length:553 Species:Homo sapiens


Alignment Length:352 Identity:85/352 - (24%)
Similarity:131/352 - (37%) Gaps:69/352 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 RSLNIFEKRNQTTLEHIKLLTGAV--LKNCSTLPNRLCASCQTCLQQAISFRERCLEVQRELLHS 79
            :.|.......::|..|::.|...:  .|.|.: |...|.:.:|..::.||               
Human   170 KDLTCLRASQESTDIHLQPLKTQLKSWKPCLS-PKSDCENSETATKEGIS--------------- 218

  Fly    80 QDDEDFLRICQESPKSVLEQEELELDLAEISIEVERLDDLNEGPIQSSGFK-------------- 130
              :|....:.||.....:.:.|..|...:.|...|:|    ..|.|...|.              
Human   219 --EEKSQGLPQEPSFRGISEHESNLVWKQGSATGEKL----RSPSQGGSFSQVIFTNKSLGKRDL 277

  Fly   131 -----------VEDILNESKINEDEPNNEDDIDYSEMDYLIYESDTEVDAKQELKSDSENPKKRR 184
                       .:.|:.:....|:.|...|...:|      ::..:.:...|.:.: .|.|.|..
Human   278 YDEAERCLILTTDSIMCQKVPPEERPYRCDVCGHS------FKQHSSLTQHQRIHT-GEKPYKCN 335

  Fly   185 N-------------RRNPRDSNRTFFCEECGNHIKDRISFILHCKRHRGVKEFGCEFCEDRFCTP 236
            .             .:......:.:.|.|||.......:.|.|.|.|.|.|...|..|...|...
Human   336 QCGKAFSLRSYLIIHQRIHSGEKAYECSECGKAFNQSSALIRHRKIHTGEKACKCNECGKAFSQS 400

  Fly   237 AELKRHIRKHTGEKPFKCRHCSRSFSDYSTRLKHERTHTNERPFVCKECNNAFTTSYILKNHMLV 301
            :.|..|.|.||||||::|..|.::||..|..::|:|.||.|||:.|.||..||..|..|..|..:
Human   401 SYLIIHQRIHTGEKPYECNECGKTFSQSSKLIRHQRIHTGERPYECNECGKAFRQSSELITHQRI 465

  Fly   302 HTGEKAFRCDLCDKLFSRYTHLTTHYR 328
            |:|||.:.|..|.|.||..::|..|.|
Human   466 HSGEKPYECSECGKAFSLSSNLIRHQR 492

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ranshiNP_649824.1 zf-AD 5..77 CDD:214871 11/61 (18%)
C2H2 Zn finger 198..218 CDD:275368 7/19 (37%)
COG5048 222..>276 CDD:227381 21/53 (40%)
C2H2 Zn finger 226..246 CDD:275368 6/19 (32%)
zf-H2C2_2 238..262 CDD:290200 11/23 (48%)
C2H2 Zn finger 254..274 CDD:275368 7/19 (37%)
zf-H2C2_2 269..291 CDD:290200 12/21 (57%)
C2H2 Zn finger 282..302 CDD:275368 8/19 (42%)
zf-H2C2_2 295..319 CDD:290200 10/23 (43%)
C2H2 Zn finger 310..328 CDD:275368 7/17 (41%)
ZNF397XP_006722621.1 SCAN 46..139 CDD:128708
SCAN 46..134 CDD:280241
COG5048 <297..546 CDD:227381 62/203 (31%)
zf-C2H2 304..326 CDD:278523 3/27 (11%)
C2H2 Zn finger 306..326 CDD:275368 3/25 (12%)
zf-H2C2_2 318..342 CDD:290200 4/24 (17%)
C2H2 Zn finger 334..354 CDD:275368 0/19 (0%)
zf-H2C2_2 346..371 CDD:290200 4/24 (17%)
C2H2 Zn finger 362..382 CDD:275368 7/19 (37%)
zf-H2C2_2 374..399 CDD:290200 9/24 (38%)
C2H2 Zn finger 390..410 CDD:275368 6/19 (32%)
zf-H2C2_2 402..427 CDD:290200 12/24 (50%)
C2H2 Zn finger 418..438 CDD:275368 7/19 (37%)
zf-H2C2_2 431..455 CDD:290200 12/23 (52%)
C2H2 Zn finger 446..466 CDD:275368 8/19 (42%)
zf-H2C2_2 458..482 CDD:290200 9/23 (39%)
C2H2 Zn finger 474..494 CDD:275368 8/19 (42%)
zf-H2C2_2 486..511 CDD:290200 3/7 (43%)
C2H2 Zn finger 502..522 CDD:275368
zf-C2H2 528..550 CDD:278523
C2H2 Zn finger 530..550 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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