DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ranshi and YY1

DIOPT Version :9

Sequence 1:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster
Sequence 2:NP_849323.1 Gene:YY1 / 826093 AraportID:AT4G06634 Length:387 Species:Arabidopsis thaliana


Alignment Length:255 Identity:58/255 - (22%)
Similarity:93/255 - (36%) Gaps:84/255 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   132 EDILNESKINEDEPNNEDDIDYSEMDYLIYESDTEVDAKQELKSDSENPKKRRNRRNPRDSNRTF 196
            ||..:..|..|.||    |:...|.     |..||:                           .|
plant    51 EDTFSRLKEKEKEP----DVPEPEP-----EPTTEI---------------------------LF 79

  Fly   197 FC--EECGNHIKDRISFILHCKRHRGVKEFGC--EFCEDRFCTPAELKRHIRKHTGEKPFKCRH- 256
            .|  :.||....|..:...|...| |.:::.|  |.|..:|...::||||...||||:.:.|.: 
plant    80 LCSYDGCGKTFFDVSALRKHSHIH-GERQYVCDQEGCGKKFLDSSKLKRHYLIHTGERNYICTYE 143

  Fly   257 -CSRSFS-DYSTRLKHERTHTNERPFVC--KECNNAFTTSYILKNHMLVH--------------- 302
             |.::|| |::.| .|.:||:.|...:|  ..|...:...|.||||:..:               
plant   144 GCGKAFSLDFNLR-SHMKTHSQENYHICPYSGCVKRYAHEYKLKNHVAAYHEKNGGGETPKYTPP 207

  Fly   303 -----------------TGEKAFRC--DLCDKLFSRYTHLTTHYRSNAHRRNMQK--ADT 341
                             :.::.:.|  :.|:|.:.....|..|.: ..|..::|:  |||
plant   208 AEKVLRTVKTPATVCGPSSDRPYACPYEGCEKAYIHEYKLKLHLK-REHPGHLQEENADT 266

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ranshiNP_649824.1 zf-AD 5..77 CDD:214871
C2H2 Zn finger 198..218 CDD:275368 5/21 (24%)
COG5048 222..>276 CDD:227381 21/58 (36%)
C2H2 Zn finger 226..246 CDD:275368 8/21 (38%)
zf-H2C2_2 238..262 CDD:290200 10/25 (40%)
C2H2 Zn finger 254..274 CDD:275368 7/22 (32%)
zf-H2C2_2 269..291 CDD:290200 6/23 (26%)
C2H2 Zn finger 282..302 CDD:275368 7/21 (33%)
zf-H2C2_2 295..319 CDD:290200 7/57 (12%)
C2H2 Zn finger 310..328 CDD:275368 5/19 (26%)
YY1NP_849323.1 C2H2 Zn finger 84..103 CDD:275368 4/18 (22%)
COG5048 <92..170 CDD:227381 26/79 (33%)
C2H2 Zn finger 110..132 CDD:275368 8/21 (38%)
C2H2 Zn finger 140..162 CDD:275368 7/22 (32%)
C2H2 Zn finger 170..189 CDD:275368 6/18 (33%)
SFP1 <196..274 CDD:227516 10/72 (14%)
C2H2 Zn finger 232..252 CDD:275368 5/19 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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