DRSC/TRiP Functional Genomics Resources

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Protein Alignment ranshi and ZNF436

DIOPT Version :9

Sequence 1:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster
Sequence 2:NP_001070663.1 Gene:ZNF436 / 80818 HGNCID:20814 Length:470 Species:Homo sapiens


Alignment Length:363 Identity:98/363 - (26%)
Similarity:145/363 - (39%) Gaps:74/363 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 VCRTCGKRTNAERSLNIFEK------------------RNQTTLEHIKLLTGAVLKNCSTLPNRL 51
            :|..|||..:....||..:|                  |:...::|.:..||....:|:......
Human   139 ICSHCGKAFSQISDLNRHQKTHTGDRPYKCYECGKGFSRSSHLIQHQRTHTGERPYDCNECGKSF 203

  Fly    52 CASCQTCLQQAISFRE---RCLE-----------VQRELLHSQDDEDFLRICQESPKSVLEQEEL 102
            ..|......|.|...|   :|.|           :|.:..||.:..   ..|:|..||......|
Human   204 GRSSHLIQHQTIHTGEKPHKCNECGKSFCRLSHLIQHQRTHSGEKP---YECEECGKSFSRSSHL 265

  Fly   103 ELDLAEISIEVERLDDLNEGPIQSS----GF-KVEDILNESKINEDE-PNNEDDIDYSEMDYLIY 161
                     ...:.....|.|.:.:    || :..|::...:::..| |...|:..         
Human   266 ---------AQHQRTHTGEKPYECNECGRGFSERSDLIKHYRVHTGERPYKCDECG--------- 312

  Fly   162 ESDTEVDAKQELKSDSENPKKRRNRRNPRDSNRTFFCEECGNHIKDRISFIL-HCKRHRGVKEFG 225
                        |:.|:|....|:|| .....:.:.|.|||.:. .|||.:: |.:.|.|.|.:.
Human   313 ------------KNFSQNSDLVRHRR-AHTGEKPYHCNECGENF-SRISHLVQHQRTHTGEKPYE 363

  Fly   226 CEFCEDRFCTPAELKRHIRKHTGEKPFKCRHCSRSFSDYSTRLKHERTHTNERPFVCKECNNAFT 290
            |..|...|...:.|..|.:.||||||::|..|.|||.:.|..:||:||||.|:|:.|.:|...||
Human   364 CNACGKSFSRSSHLITHQKIHTGEKPYECNECWRSFGERSDLIKHQRTHTGEKPYECVQCGKGFT 428

  Fly   291 TSYILKNHMLVHTGEKAFRCDLCDKLFSRYTHLTTHYR 328
            .|..|..|..||||||.:.|..|:|.|||.:.|..|.|
Human   429 QSSNLITHQRVHTGEKPYECTECEKSFSRSSALIKHKR 466

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ranshiNP_649824.1 zf-AD 5..77 CDD:214871 19/103 (18%)
C2H2 Zn finger 198..218 CDD:275368 8/20 (40%)
COG5048 222..>276 CDD:227381 23/53 (43%)
C2H2 Zn finger 226..246 CDD:275368 5/19 (26%)
zf-H2C2_2 238..262 CDD:290200 12/23 (52%)
C2H2 Zn finger 254..274 CDD:275368 9/19 (47%)
zf-H2C2_2 269..291 CDD:290200 11/21 (52%)
C2H2 Zn finger 282..302 CDD:275368 7/19 (37%)
zf-H2C2_2 295..319 CDD:290200 12/23 (52%)
C2H2 Zn finger 310..328 CDD:275368 8/17 (47%)
ZNF436NP_001070663.1 KRAB 13..54 CDD:307490
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 62..103
C2H2 Zn finger 140..160 CDD:275368 7/19 (37%)
zf-H2C2_2 152..177 CDD:316026 3/24 (13%)
C2H2 Zn finger 168..188 CDD:275368 2/19 (11%)
zf-H2C2_2 180..205 CDD:316026 4/24 (17%)
C2H2 Zn finger 196..216 CDD:275368 3/19 (16%)
COG5048 <212..467 CDD:227381 85/290 (29%)
C2H2 Zn finger 224..244 CDD:275368 3/19 (16%)
C2H2 Zn finger 252..272 CDD:275368 5/28 (18%)
C2H2 Zn finger 280..300 CDD:275368 3/19 (16%)
C2H2 Zn finger 308..328 CDD:275368 7/41 (17%)
C2H2 Zn finger 336..356 CDD:275368 8/20 (40%)
C2H2 Zn finger 364..384 CDD:275368 5/19 (26%)
C2H2 Zn finger 392..412 CDD:275368 9/19 (47%)
C2H2 Zn finger 420..440 CDD:275368 7/19 (37%)
C2H2 Zn finger 448..468 CDD:275368 9/19 (47%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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