DRSC/TRiP Functional Genomics Resources

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Protein Alignment ranshi and znf1003

DIOPT Version :9

Sequence 1:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster
Sequence 2:NP_001104681.1 Gene:znf1003 / 793476 ZFINID:ZDB-GENE-080219-42 Length:336 Species:Danio rerio


Alignment Length:325 Identity:86/325 - (26%)
Similarity:133/325 - (40%) Gaps:64/325 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 DEDFLRICQESPKSVLE-QEELELDLAEISIEVERLDDLNEGPIQSSGFKVEDILNESKINEDEP 145
            |.:..||.||..:.::: :||.|    |:|.:.|:....:|...||....:..:...:..|.:..
Zfish     3 DPEPCRIKQEDTEELIDVKEESE----ELSEDEEKHQVKSEEETQSEPEHLFSLQTNTNNNHNLM 63

  Fly   146 NNEDDIDYSEMDYLIYESDTEV---------DAKQELKSDSENPK--------------KRRNRR 187
            ..:::.|...:|.:.:...|||         .:.::|....::.|              ||..|.
Zfish    64 VTKEESDELSVDKVHHSVHTEVKPNSCTLCGKSYKQLSHLQQHQKIHTGERPYTCDQCGKRFRRS 128

  Fly   188 NPRDSN----------------RTFF-------------------CEECGNHIKDRISFILHCKR 217
            :..:.:                |||.                   |.|||.......:..:|.|.
Zfish   129 STLNQHMKIHTGERPHYCDQCGRTFLRTSELRRHLTVHTNEKPYSCSECGKSFSRLSNLKVHQKI 193

  Fly   218 HRGVKEFGCEFCEDRFCTPAELKRHIRKHTGEKPFKCRHCSRSFSDYSTRLKHERTHTNERPFVC 282
            |.||||..|..|...|.....|:.|.|.||||||:||.||.:.||...:...|||.||.|:|:.|
Zfish   194 HAGVKEHVCIECGKSFINAQVLQIHQRIHTGEKPYKCSHCDKRFSLLHSLKSHERIHTGEKPYTC 258

  Fly   283 KECNNAFTTSYILKNHMLVHTGEKAFRCDLCDKLFSRYTHLTTHYRSNAHRRNMQKAD-TIFDKP 346
            .:|..:|..|..|:.||::||..|..:||.|.|.|.|.:||..|...:...::...|. .:|..|
Zfish   259 TQCGKSFKNSSQLRQHMMIHTRVKTHKCDQCGKTFLRPSHLKNHLTVHTKEKSSSLAPLEMFSAP 323

  Fly   347  346
            Zfish   324  323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ranshiNP_649824.1 zf-AD 5..77 CDD:214871
C2H2 Zn finger 198..218 CDD:275368 6/19 (32%)
COG5048 222..>276 CDD:227381 24/53 (45%)
C2H2 Zn finger 226..246 CDD:275368 6/19 (32%)
zf-H2C2_2 238..262 CDD:290200 13/23 (57%)
C2H2 Zn finger 254..274 CDD:275368 8/19 (42%)
zf-H2C2_2 269..291 CDD:290200 10/21 (48%)
C2H2 Zn finger 282..302 CDD:275368 7/19 (37%)
zf-H2C2_2 295..319 CDD:290200 11/23 (48%)
C2H2 Zn finger 310..328 CDD:275368 9/17 (53%)
znf1003NP_001104681.1 COG5048 <36..269 CDD:227381 56/232 (24%)
C2H2 Zn finger 90..110 CDD:275368 2/19 (11%)
zf-H2C2_2 102..127 CDD:290200 3/24 (13%)
C2H2 Zn finger 118..138 CDD:275368 3/19 (16%)
zf-H2C2_2 131..155 CDD:290200 3/23 (13%)
C2H2 Zn finger 146..166 CDD:275368 3/19 (16%)
zf-H2C2_2 158..183 CDD:290200 4/24 (17%)
C2H2 Zn finger 174..194 CDD:275368 6/19 (32%)
C2H2 Zn finger 202..222 CDD:275368 6/19 (32%)
zf-H2C2_2 215..238 CDD:290200 13/22 (59%)
C2H2 Zn finger 230..250 CDD:275368 8/19 (42%)
zf-H2C2_2 242..267 CDD:290200 10/24 (42%)
C2H2 Zn finger 258..278 CDD:275368 7/19 (37%)
C2H2 Zn finger 286..306 CDD:275368 9/19 (47%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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