DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ranshi and MGC146893

DIOPT Version :9

Sequence 1:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster
Sequence 2:NP_001072248.1 Gene:MGC146893 / 779697 -ID:- Length:180 Species:Xenopus tropicalis


Alignment Length:143 Identity:55/143 - (38%)
Similarity:75/143 - (52%) Gaps:0/143 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   198 CEECGNHIKDRISFILHCKRHRGVKEFGCEFCEDRFCTPAELKRHIRKHTGEKPFKCRHCSRSFS 262
            |.|||.....:...|:|.:.|.|.|.|.|..|..:|....:|..|...|||||||.|..|.:.|:
 Frog    18 CPECGKRFSYKNKLIIHYRVHTGEKPFMCTECGKKFRRKQDLTEHQLIHTGEKPFMCTECDKQFN 82

  Fly   263 DYSTRLKHERTHTNERPFVCKECNNAFTTSYILKNHMLVHTGEKAFRCDLCDKLFSRYTHLTTHY 327
            ..|..|.|:|.||..:||||.||..:|:....::||..:|||||.|.|..|.|.|:..:.|::||
 Frog    83 KRSNLLSHQRIHTGVKPFVCMECGKSFSDKSSIQNHQRIHTGEKPFSCTECGKRFTTKSQLSSHY 147

  Fly   328 RSNAHRRNMQKAD 340
            ..:...:....||
 Frog   148 MVHTGEKPFACAD 160

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ranshiNP_649824.1 zf-AD 5..77 CDD:214871
C2H2 Zn finger 198..218 CDD:275368 6/19 (32%)
COG5048 222..>276 CDD:227381 22/53 (42%)
C2H2 Zn finger 226..246 CDD:275368 5/19 (26%)
zf-H2C2_2 238..262 CDD:290200 11/23 (48%)
C2H2 Zn finger 254..274 CDD:275368 7/19 (37%)
zf-H2C2_2 269..291 CDD:290200 11/21 (52%)
C2H2 Zn finger 282..302 CDD:275368 6/19 (32%)
zf-H2C2_2 295..319 CDD:290200 12/23 (52%)
C2H2 Zn finger 310..328 CDD:275368 6/17 (35%)
MGC146893NP_001072248.1 COG5048 <5..166 CDD:227381 55/143 (38%)
C2H2 Zn finger 18..38 CDD:275368 6/19 (32%)
C2H2 Zn finger 46..66 CDD:275368 5/19 (26%)
C2H2 Zn finger 74..94 CDD:275368 7/19 (37%)
C2H2 Zn finger 102..122 CDD:275368 6/19 (32%)
C2H2 Zn finger 130..150 CDD:275368 7/19 (37%)
C2H2 Zn finger 158..179 CDD:275368 2/3 (67%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.