DRSC/TRiP Functional Genomics Resources

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Protein Alignment ranshi and ZNF140

DIOPT Version :9

Sequence 1:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster
Sequence 2:XP_011533135.1 Gene:ZNF140 / 7699 HGNCID:12925 Length:458 Species:Homo sapiens


Alignment Length:313 Identity:89/313 - (28%)
Similarity:136/313 - (43%) Gaps:95/313 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 EVQRELL----HSQDDEDFLRICQESPKSVLEQEELELDLAEISIEVERLDDLNEGPIQSS---G 128
            ||:|:|.    .|.:.:||      |||:|:..:..:.      :.:||:  |::||:.||   |
Human    71 EVKRDLFSVSESSGEIKDF------SPKNVIYDDSSQY------LIMERI--LSQGPVYSSFKGG 121

  Fly   129 FKVED---ILNESK--INEDEPNNEDDIDYSEMDYLIYESDTEVDAKQELKSDSENPKKRRNRRN 188
            :|.:|   :|.|::  |.:                 :..|..|..|:....|..|.|        
Human   122 WKCKDHTEMLQENQGCIRK-----------------VTVSHQEALAQHMNISTVERP-------- 161

  Fly   189 PRDSNRTFFCEECGNHIKDRISFILHCKRHRGVKEFGCEFCEDRFCTPAELKRHIRKHTGEKPFK 253
                   :.|.|||.....|.|.:||.:.|.|.|.:.|:.|...|...:.|.:|...|||:||.:
Human   162 -------YGCHECGKTFGRRFSLVLHQRTHTGEKPYACKECGKTFSQISNLVKHQMIHTGKKPHE 219

  Fly   254 CRHCSRSFSDYSTRLKHERTHTNERPFVCKECNNAFTTS---------------YI--------- 294
            |:.|:::||..|..::|:||||.|:|:.|.||..||:.:               ||         
Human   220 CKDCNKTFSYLSFLIEHQRTHTGEKPYECTECGKAFSRASNLTRHQRIHIGKKQYICRKCGKAFS 284

  Fly   295 ----LKNHMLVHTGEKAFRCDLCDKLFSRYTHLTTH---------YRSNAHRR 334
                |..|.:.|||||.:.|..|.|.|.|::|||.|         |..|..|:
Human   285 SGSELIRHQITHTGEKPYECIECGKAFRRFSHLTRHQSIHTTKTPYECNECRK 337

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ranshiNP_649824.1 zf-AD 5..77 CDD:214871 3/5 (60%)
C2H2 Zn finger 198..218 CDD:275368 8/19 (42%)
COG5048 222..>276 CDD:227381 20/53 (38%)
C2H2 Zn finger 226..246 CDD:275368 5/19 (26%)
zf-H2C2_2 238..262 CDD:290200 9/23 (39%)
C2H2 Zn finger 254..274 CDD:275368 7/19 (37%)
zf-H2C2_2 269..291 CDD:290200 12/21 (57%)
C2H2 Zn finger 282..302 CDD:275368 9/47 (19%)
zf-H2C2_2 295..319 CDD:290200 11/23 (48%)
C2H2 Zn finger 310..328 CDD:275368 9/26 (35%)
ZNF140XP_011533135.1 KRAB 6..66 CDD:214630
KRAB 6..45 CDD:279668
COG5048 160..>453 CDD:227381 60/193 (31%)
C2H2 Zn finger 164..184 CDD:275368 8/19 (42%)
zf-H2C2_2 176..201 CDD:290200 9/24 (38%)
C2H2 Zn finger 192..212 CDD:275368 5/19 (26%)
zf-H2C2_2 204..229 CDD:290200 10/24 (42%)
C2H2 Zn finger 220..240 CDD:275368 7/19 (37%)
zf-H2C2_2 233..257 CDD:290200 12/23 (52%)
C2H2 Zn finger 248..268 CDD:275368 5/19 (26%)
zf-H2C2_2 260..285 CDD:290200 2/24 (8%)
C2H2 Zn finger 276..296 CDD:275368 2/19 (11%)
zf-H2C2_2 288..313 CDD:290200 11/24 (46%)
C2H2 Zn finger 304..324 CDD:275368 9/19 (47%)
C2H2 Zn finger 332..352 CDD:275368 2/6 (33%)
C2H2 Zn finger 360..380 CDD:275368
zf-H2C2_2 372..397 CDD:290200
C2H2 Zn finger 388..408 CDD:275368
zf-H2C2_2 400..424 CDD:290200
C2H2 Zn finger 416..436 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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