DRSC/TRiP Functional Genomics Resources

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Protein Alignment ranshi and Zfp169

DIOPT Version :9

Sequence 1:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster
Sequence 2:XP_011242711.1 Gene:Zfp169 / 67911 MGIID:1915161 Length:732 Species:Mus musculus


Alignment Length:352 Identity:95/352 - (26%)
Similarity:137/352 - (38%) Gaps:75/352 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 VCRTCGKRTNAERSLNIFEKRNQTTLEHIKLLTGAVLKNCSTLPNRLCASCQTCLQQAISFRERC 69
            ||..||:|         |.::. |.:.|.|..||              .....|.|...||.::.
Mouse   400 VCPDCGQR---------FGQKG-TLMRHQKTHTG--------------EKPFVCRQCGWSFTQKV 440

  Fly    70 LEVQRELLHSQDDEDFLRICQESP-----KSVLEQEELELDLAEISIEVERLDDLNEGPIQ---- 125
            ..::.:.:|: :.:.||  |.|..     ||:|.:              .|...:.|.|..    
Mouse   441 NLIRHQRIHT-EVKPFL--CPECGRAFEFKSLLTR--------------HRKTHMGEKPYVCPQC 488

  Fly   126 SSGFKVE-DILNESKINEDE-----PNNEDDIDYSEMDYLIYESDT-----------EVDAKQEL 173
            ..||..: :::...:|:..|     |  |....:.:...||....|           |.....|.
Mouse   489 GRGFSQKFNLIGHQRIHTGELPFLCP--ECGRAFVKQSMLIRHQRTHAGWEKPYQCPECGRTFEF 551

  Fly   174 KSDSENPKKRRNRRNPRDSNRTFFCEECGNHIKDRISFILHCKRHRGVKEFGCEFCEDRFCTPAE 238
            ||.....:|......|      :.|.:||.....:.:.|.|.|.|.|.|.:.|..|..||.....
Mouse   552 KSLLTRHQKIHTGEKP------YVCPQCGRGFSQKFNLIGHQKTHTGEKPYACPQCGQRFRQKFN 610

  Fly   239 LKRHIRKHTGEKPFKCRHCSRSFSDYSTRLKHERTHTNERPFVCKECNNAFTTSYILKNHMLVHT 303
            |.||.|.|||||||.|..|.|:|....:.::|:|||..|:|:.|.||..||....:...|...||
Mouse   611 LARHQRIHTGEKPFLCAECGRAFGKKVSLIRHQRTHGEEKPYQCTECGRAFEFKSLFIRHQKTHT 675

  Fly   304 GEKAFRCDLCDKLFSRYTHLTTHYRSN 330
            |||.:.|..|.|.||:..:|..|.||:
Mouse   676 GEKPYVCPECGKAFSQKFNLIGHQRSH 702

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ranshiNP_649824.1 zf-AD 5..77 CDD:214871 15/71 (21%)
C2H2 Zn finger 198..218 CDD:275368 6/19 (32%)
COG5048 222..>276 CDD:227381 24/53 (45%)
C2H2 Zn finger 226..246 CDD:275368 8/19 (42%)
zf-H2C2_2 238..262 CDD:290200 14/23 (61%)
C2H2 Zn finger 254..274 CDD:275368 6/19 (32%)
zf-H2C2_2 269..291 CDD:290200 11/21 (52%)
C2H2 Zn finger 282..302 CDD:275368 6/19 (32%)
zf-H2C2_2 295..319 CDD:290200 10/23 (43%)
C2H2 Zn finger 310..328 CDD:275368 7/17 (41%)
Zfp169XP_011242711.1 KRAB 14..73 CDD:214630
C2H2 Zn finger 233..252 CDD:275368
COG5048 256..727 CDD:227381 95/352 (27%)
C2H2 Zn finger 260..280 CDD:275368
C2H2 Zn finger 288..309 CDD:275368
C2H2 Zn finger 317..337 CDD:275368
C2H2 Zn finger 345..365 CDD:275368
C2H2 Zn finger 373..393 CDD:275368
C2H2 Zn finger 401..421 CDD:275368 8/29 (28%)
C2H2 Zn finger 429..449 CDD:275368 4/19 (21%)
C2H2 Zn finger 457..477 CDD:275368 6/33 (18%)
C2H2 Zn finger 485..505 CDD:275368 2/19 (11%)
C2H2 Zn finger 513..533 CDD:275368 4/21 (19%)
C2H2 Zn finger 542..562 CDD:275368 5/19 (26%)
C2H2 Zn finger 570..590 CDD:275368 6/19 (32%)
C2H2 Zn finger 598..618 CDD:275368 8/19 (42%)
C2H2 Zn finger 626..646 CDD:275368 6/19 (32%)
C2H2 Zn finger 654..674 CDD:275368 6/19 (32%)
C2H2 Zn finger 682..702 CDD:275368 8/19 (42%)
C2H2 Zn finger 710..730 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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