DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ranshi and AgaP_AGAP004541

DIOPT Version :9

Sequence 1:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster
Sequence 2:XP_001688465.2 Gene:AgaP_AGAP004541 / 5667453 VectorBaseID:AGAP004541 Length:2515 Species:Anopheles gambiae


Alignment Length:371 Identity:83/371 - (22%)
Similarity:132/371 - (35%) Gaps:125/371 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 CRTCGKRTNAERSL------------NIFEKRNQTTLEHIKLLTGAVLKNCSTLPNRL-CASCQT 57
            ||.|....:..|.|            .|||   .||:| |.|.:.         |:.| |.||..
Mosquito    45 CRLCCNEDSHLRELFAGGYKEELLVRKIFE---CTTVE-ITLASD---------PDALICYSCVA 96

  Fly    58 CLQQAISFRERCLEVQRELLHSQDDEDF---LRICQESPKSVLE----QEELELDLAEIS----- 110
            .:::...:||:|.  ..::||.......   :.....|...:|.    ::|.:::..||:     
Mosquito    97 KIEEFHHYREQCR--TNDVLHRNWKRRLGGQIATASSSSSMILPAKYIKKEKDVESFEINAGDFF 159

  Fly   111 -IEV-ERLDDL--NEGPIQS--SGFKVEDILNESKINEDEPNN-EDDIDYSEMDY------LIYE 162
             ::| ::.|::  ..|||.|  ...|:.||.:.:   ||..|| |||:   .||:      |:..
Mosquito   160 PVDVPQQSDEMFGMHGPIASVADSSKMPDIDDTA---EDIWNNFEDDV---SMDHTSALIPLMES 218

  Fly   163 SDTEVDAKQELKSDSENPKKRRNRRNPRDSNRTFFCEECGNHIKDRISFILHCKRHRGVKEFGCE 227
            |...|....|  :||:.|.:...      :.....|     .::|...:|     .:|..::.|.
Mosquito   219 SSYSVSVAPE--TDSQRPFREVY------NGEALVC-----LVQDGFLYI-----QKGKGQWHCR 265

  Fly   228 FCEDRFCTPAELKRHIRKHTGEKPFKCRHCSRSFSDYSTRLKHERTHTNERPFVCKECNNAFTTS 292
             .||  |..|.::|                 ....|..|   :...||:.     ||..|:.|..
Mosquito   266 -VED--CAAAIIRR-----------------AESEDLET---NNILHTHN-----KEVENSATDL 302

  Fly   293 YI---LKNHMLVHTGEKAFRCDLCDKLFSRYTHLTTHYRSNAHRRN 335
            .|   |||         |....:.|:||        ||..|..:.|
Mosquito   303 QIWQLLKN---------ASPNGMSDELF--------HYVKNVKKGN 331

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ranshiNP_649824.1 zf-AD 5..77 CDD:214871 21/83 (25%)
C2H2 Zn finger 198..218 CDD:275368 3/19 (16%)
COG5048 222..>276 CDD:227381 9/53 (17%)
C2H2 Zn finger 226..246 CDD:275368 6/19 (32%)
zf-H2C2_2 238..262 CDD:290200 1/23 (4%)
C2H2 Zn finger 254..274 CDD:275368 2/19 (11%)
zf-H2C2_2 269..291 CDD:290200 5/21 (24%)
C2H2 Zn finger 282..302 CDD:275368 8/22 (36%)
zf-H2C2_2 295..319 CDD:290200 7/23 (30%)
C2H2 Zn finger 310..328 CDD:275368 4/17 (24%)
AgaP_AGAP004541XP_001688465.2 zf-AD 44..117 CDD:214871 23/86 (27%)
FLYWCH 323..382 CDD:282369 3/9 (33%)
FLYWCH 463..522 CDD:282369
FLYWCH 546..605 CDD:282369
FLYWCH 691..752 CDD:282369
FLYWCH 796..856 CDD:282369
FLYWCH 943..1005 CDD:282369
FLYWCH 1058..1118 CDD:282369
FLYWCH 1267..1332 CDD:282369
FLYWCH 1394..1449 CDD:282369
FLYWCH 1608..1664 CDD:282369
FLYWCH 2126..2176 CDD:282369
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24388
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.