DRSC/TRiP Functional Genomics Resources

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Protein Alignment ranshi and znf1041

DIOPT Version :9

Sequence 1:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster
Sequence 2:NP_001107903.1 Gene:znf1041 / 565096 ZFINID:ZDB-GENE-080213-11 Length:443 Species:Danio rerio


Alignment Length:289 Identity:77/289 - (26%)
Similarity:108/289 - (37%) Gaps:64/289 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 ERCLEVQRELLHSQDDEDFLRICQESPKSVLEQEELELDLAEISIEVERLDDLNEGPIQSSGFKV 131
            |....|:.|.|..|.|...|:   |......|.||...|:.           .:|.|        
Zfish    14 EETFTVKEEDLQEQTDPIVLK---EETHQWNEMEEKHQDMT-----------TDEKP-------- 56

  Fly   132 EDILNESKINEDEPNNEDDIDYSEMDYLIYESDTEVDAKQELKSDSENPK-----KRRNRRNP-- 189
              .|.|...::..|...             :|...|..||..||.|:.|.     :...|..|  
Zfish    57 --TLTEKTSSQGRPRKS-------------KSRCNVSCKQSRKSFSQKPNLDVHMRVHTREKPYN 106

  Fly   190 --------------------RDSNRTFFCEECGNHIKDRISFILHCKRHRGVKEFGCEFCEDRFC 234
                                ....|.:.|::||.......:|.:|.:.|.|.:.:.|:.|...|.
Zfish   107 CEQCGKSFGQKQSFKIHMRIHTGERPYTCQQCGQSFYHAGNFAVHRRIHTGERPYTCQQCGQSFY 171

  Fly   235 TPAELKRHIRKHTGEKPFKCRHCSRSFSDYSTRLKHERTHTNERPFVCKECNNAFTTSYILKNHM 299
            |...|..|:|.||||||:.|..|.:||....|...|.|:||.|||:.|:.|..:|.|:.....||
Zfish   172 TGGNLAVHMRIHTGEKPYSCIQCGKSFKQNGTLKVHMRSHTGERPYTCQLCGKSFYTTGNFAQHM 236

  Fly   300 LVHTGEKAFRCDLCDKLFSRYTHLTTHYR 328
            .:||||:.:.|..|.|.|.:..:|..|.|
Zfish   237 RIHTGERPYTCQQCGKSFYQSANLAAHMR 265

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ranshiNP_649824.1 zf-AD 5..77 CDD:214871 3/9 (33%)
C2H2 Zn finger 198..218 CDD:275368 5/19 (26%)
COG5048 222..>276 CDD:227381 21/53 (40%)
C2H2 Zn finger 226..246 CDD:275368 7/19 (37%)
zf-H2C2_2 238..262 CDD:290200 12/23 (52%)
C2H2 Zn finger 254..274 CDD:275368 7/19 (37%)
zf-H2C2_2 269..291 CDD:290200 10/21 (48%)
C2H2 Zn finger 282..302 CDD:275368 6/19 (32%)
zf-H2C2_2 295..319 CDD:290200 10/23 (43%)
C2H2 Zn finger 310..328 CDD:275368 6/17 (35%)
znf1041NP_001107903.1 C2H2 Zn finger 79..99 CDD:275368 6/19 (32%)
zf-H2C2_2 91..114 CDD:290200 2/22 (9%)
COG5048 103..>429 CDD:227381 51/163 (31%)
C2H2 Zn finger 107..127 CDD:275368 0/19 (0%)
zf-H2C2_2 119..142 CDD:290200 4/22 (18%)
C2H2 Zn finger 135..155 CDD:275368 5/19 (26%)
C2H2 Zn finger 163..183 CDD:275368 7/19 (37%)
zf-H2C2_2 175..200 CDD:290200 13/24 (54%)
C2H2 Zn finger 191..211 CDD:275368 7/19 (37%)
zf-H2C2_2 204..228 CDD:290200 10/23 (43%)
C2H2 Zn finger 219..239 CDD:275368 6/19 (32%)
zf-H2C2_2 231..254 CDD:290200 9/22 (41%)
C2H2 Zn finger 247..267 CDD:275368 7/19 (37%)
zf-H2C2_2 259..284 CDD:290200 3/7 (43%)
C2H2 Zn finger 275..295 CDD:275368
C2H2 Zn finger 303..323 CDD:275368
zf-H2C2_2 315..340 CDD:290200
C2H2 Zn finger 331..351 CDD:275368
zf-H2C2_2 344..368 CDD:290200
C2H2 Zn finger 359..379 CDD:275368
C2H2 Zn finger 387..407 CDD:275368
zf-H2C2_2 399..424 CDD:290200
C2H2 Zn finger 415..435 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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