DRSC/TRiP Functional Genomics Resources

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Protein Alignment ranshi and znf420

DIOPT Version :9

Sequence 1:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster
Sequence 2:NP_001016394.1 Gene:znf420 / 549148 XenbaseID:XB-GENE-5724906 Length:410 Species:Xenopus tropicalis


Alignment Length:281 Identity:76/281 - (27%)
Similarity:111/281 - (39%) Gaps:47/281 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 ELLHSQDDEDFLRICQES----PKSVLEQEELELDLAEISIEVE-RLDDLNEGPIQSSGFKVEDI 134
            |:..|.:|||..|...|:    |.|.....|.....||...|.| .|...:|. ..|...:..|:
 Frog    12 EMKESHNDEDNSRAASETSNGQPVSSRNSSEGSNSPAETGSEAEGNLPGQSEN-TDSELLETPDL 75

  Fly   135 LNESKINEDEPNNEDDI----------------DYSEMDYLIYESDTEVDAKQELKSDSENPKKR 183
            .::...:......::||                .|.:.||.:::                     
 Frog    76 FDDDDESVTGETKKNDICKKVLAKYMCMVCGKMFYRKPDYTVHQ--------------------- 119

  Fly   184 RNRRNPRDSNRTFFCEECGNHIKDRISFILHCKRHRGVKEFGCEFCEDRFCTPAELKRHIRKHTG 248
                ......|.:.|..||.......|...|.:.|..||.|.|..|...|...:.|..|.|.|||
 Frog   120 ----RTHTGERPYSCTVCGKRFTQSSSLARHLRVHSEVKPFMCTDCGKSFSQNSHLVTHQRIHTG 180

  Fly   249 EKPFKCRHCSRSFSDYSTRLKHERTHTNERPFVCKECNNAFTTSYILKNHMLVHTGEKAFRCDLC 313
            |:|:.|..|.:|||..|..:||::.|..|:.:.|..|..:||.|..|:.|:.|||.||.:.|::|
 Frog   181 ERPYSCNECGKSFSGSSNLVKHKKVHAGEKSWHCPGCGKSFTCSSQLRTHLRVHTNEKPYACEIC 245

  Fly   314 DKLFSRYTHLTTHYRSNAHRR 334
            .|.||..::|.||.|.:...|
 Frog   246 GKCFSSSSNLVTHQRVHTGER 266

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ranshiNP_649824.1 zf-AD 5..77 CDD:214871 1/1 (100%)
C2H2 Zn finger 198..218 CDD:275368 5/19 (26%)
COG5048 222..>276 CDD:227381 22/53 (42%)
C2H2 Zn finger 226..246 CDD:275368 6/19 (32%)
zf-H2C2_2 238..262 CDD:290200 11/23 (48%)
C2H2 Zn finger 254..274 CDD:275368 8/19 (42%)
zf-H2C2_2 269..291 CDD:290200 7/21 (33%)
C2H2 Zn finger 282..302 CDD:275368 7/19 (37%)
zf-H2C2_2 295..319 CDD:290200 11/23 (48%)
C2H2 Zn finger 310..328 CDD:275368 8/17 (47%)
znf420NP_001016394.1 CobT <8..>91 CDD:130712 18/79 (23%)
C2H2 Zn finger 102..122 CDD:275368 3/44 (7%)
zf-H2C2_2 118..139 CDD:372612 4/45 (9%)
C2H2 Zn finger 130..150 CDD:275368 5/19 (26%)
COG5048 <141..386 CDD:227381 49/126 (39%)
C2H2 Zn finger 158..178 CDD:275368 6/19 (32%)
C2H2 Zn finger 186..206 CDD:275368 8/19 (42%)
C2H2 Zn finger 214..234 CDD:275368 7/19 (37%)
C2H2 Zn finger 242..262 CDD:275368 9/19 (47%)
C2H2 Zn finger 270..290 CDD:275368
C2H2 Zn finger 298..318 CDD:275368
C2H2 Zn finger 326..346 CDD:275368
C2H2 Zn finger 354..374 CDD:275368
C2H2 Zn finger 382..402 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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