DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ranshi and Zfp583

DIOPT Version :9

Sequence 1:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster
Sequence 2:NP_001128081.2 Gene:Zfp583 / 499068 RGDID:1562044 Length:568 Species:Rattus norvegicus


Alignment Length:240 Identity:68/240 - (28%)
Similarity:98/240 - (40%) Gaps:43/240 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   136 NESKINEDE-PNNEDDIDYSEMDYLIYESDTEVDAKQELKS----DSENPKKRRNRRNP------ 189
            ::|.|...| |.|:..:  .......:..|..:|..|...:    |...|:||..|:.|      
  Rat   140 SQSLITHKEVPENQSSV--CNPSCQAFHQDAILDTPQSFSTKERIDQSEPQKRSYRKKPIEMKHK 202

  Fly   190 ------------------------------RDSNRTFFCEECGNHIKDRISFILHCKRHRGVKEF 224
                                          ....:.:.|.|||.......:...|.:.|.|.|.:
  Rat   203 KVHVEKKILKCTECEKVFNQSSSLTLHQRIHTGEKPYACVECGKAFSQSANLAQHKRIHTGEKPY 267

  Fly   225 GCEFCEDRFCTPAELKRHIRKHTGEKPFKCRHCSRSFSDYSTRLKHERTHTNERPFVCKECNNAF 289
            .|:.|...|...|.|.:|.|.||||||::|:.|.::||..:...:|:|.||.||||.|.||..||
  Rat   268 ECKECRKAFSQNAHLAQHQRVHTGEKPYQCKECKKAFSQIAHLTQHQRIHTGERPFECIECGKAF 332

  Fly   290 TTSYILKNHMLVHTGEKAFRCDLCDKLFSRYTHLTTHYRSNAHRR 334
            :....|..|..:|||||.:.|.:|.|.||...:|..|.|.:...|
  Rat   333 SNGSFLAQHQRIHTGEKPYVCHVCGKAFSHRGYLIVHQRIHTGER 377

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ranshiNP_649824.1 zf-AD 5..77 CDD:214871
C2H2 Zn finger 198..218 CDD:275368 5/19 (26%)
COG5048 222..>276 CDD:227381 21/53 (40%)
C2H2 Zn finger 226..246 CDD:275368 7/19 (37%)
zf-H2C2_2 238..262 CDD:290200 11/23 (48%)
C2H2 Zn finger 254..274 CDD:275368 6/19 (32%)
zf-H2C2_2 269..291 CDD:290200 13/21 (62%)
C2H2 Zn finger 282..302 CDD:275368 7/19 (37%)
zf-H2C2_2 295..319 CDD:290200 11/23 (48%)
C2H2 Zn finger 310..328 CDD:275368 7/17 (41%)
Zfp583NP_001128081.2 KRAB 6..66 CDD:214630
COG5048 212..541 CDD:227381 54/166 (33%)
C2H2 Zn finger 213..233 CDD:275368 0/19 (0%)
C2H2 Zn finger 241..261 CDD:275368 5/19 (26%)
C2H2 Zn finger 269..289 CDD:275368 7/19 (37%)
C2H2 Zn finger 297..317 CDD:275368 6/19 (32%)
C2H2 Zn finger 325..345 CDD:275368 7/19 (37%)
C2H2 Zn finger 353..373 CDD:275368 8/19 (42%)
C2H2 Zn finger 381..401 CDD:275368
C2H2 Zn finger 409..429 CDD:275368
C2H2 Zn finger 437..457 CDD:275368
C2H2 Zn finger 465..485 CDD:275368
C2H2 Zn finger 493..513 CDD:275368
C2H2 Zn finger 521..541 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.