DRSC/TRiP Functional Genomics Resources

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Protein Alignment ranshi and zgc:101130

DIOPT Version :9

Sequence 1:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster
Sequence 2:NP_001037792.1 Gene:zgc:101130 / 445160 ZFINID:ZDB-GENE-040801-72 Length:372 Species:Danio rerio


Alignment Length:352 Identity:88/352 - (25%)
Similarity:128/352 - (36%) Gaps:133/352 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 CRTCGK----RTNAERSLNIF--EKRNQTTLEHIKLLTGAVLKNCSTLPNRLCASCQTCLQQAIS 64
            |..|||    :|..:|.:|..  ||      .|:.|..|.            |.:|...||:.:.
Zfish   115 CSLCGKSLACKTRLKRHMNTHTGEK------PHVCLQCGK------------CFTCNASLQRHVK 161

  Fly    65 FRERCLEVQRELLHSQDDEDFLRICQESPKSVLEQEELELDLAEISIEVERLDDLNEGPIQSSGF 129
                        ||:.:..   .||:|..|..:..|:|   ::.::|..                
Zfish   162 ------------LHTGERP---HICRECGKGFIRNEKL---ISHMTIHT---------------- 192

  Fly   130 KVEDILNESKINEDEPNNEDDIDYSEMDYLIYESDTEVDAKQELKSDSENPKKRRNRRNPRDSNR 194
                                                                          ..|
Zfish   193 --------------------------------------------------------------GER 195

  Fly   195 TFFCEECG------NHIKDRISFILHCKRHRGVKEFGCEFCEDRFCTPAELKRHIRKHTGEKPFK 253
            .|.|:|||      |.::|      |...|..||.|.|:.|...|.||:.||||:|.|:||||:.
Zfish   196 PFICDECGKSFRHVNGLRD------HQLSHSAVKSFPCDQCNKEFITPSALKRHLRVHSGEKPYL 254

  Fly   254 CRHCSRSFSDYSTRLKHERTHTNERPFVCKECNNAFTTSYILKNHMLVHTGEKAFRCDLCDKLFS 318
            |..|.||||......:|:..|...:..||.||..||.||..||.|..:|:|||.:.|.:|.|.|:
Zfish   255 CTLCGRSFSRVDIFKRHQEVHIGVKDHVCFECGKAFITSDQLKQHQRIHSGEKPYTCSVCAKSFT 319

  Fly   319 RYTHLTTHYRSNAHRRNMQKADTIFDK 345
            :..||..|.|.: |::.:|..||:.::
Zfish   320 QSAHLKVHDRVH-HKKTVQHCDTVLEE 345

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ranshiNP_649824.1 zf-AD 5..77 CDD:214871 16/76 (21%)
C2H2 Zn finger 198..218 CDD:275368 7/25 (28%)
COG5048 222..>276 CDD:227381 25/53 (47%)
C2H2 Zn finger 226..246 CDD:275368 10/19 (53%)
zf-H2C2_2 238..262 CDD:290200 14/23 (61%)
C2H2 Zn finger 254..274 CDD:275368 7/19 (37%)
zf-H2C2_2 269..291 CDD:290200 8/21 (38%)
C2H2 Zn finger 282..302 CDD:275368 10/19 (53%)
zf-H2C2_2 295..319 CDD:290200 11/23 (48%)
C2H2 Zn finger 310..328 CDD:275368 7/17 (41%)
zgc:101130NP_001037792.1 COG5048 43..>334 CDD:227381 85/339 (25%)
C2H2 Zn finger 59..79 CDD:275368
zf-H2C2_2 72..96 CDD:290200
C2H2 Zn finger 87..107 CDD:275368
C2H2 Zn finger 115..135 CDD:275368 7/19 (37%)
zf-H2C2_2 128..152 CDD:290200 8/41 (20%)
C2H2 Zn finger 143..163 CDD:275368 6/43 (14%)
C2H2 Zn finger 171..191 CDD:275368 5/22 (23%)
C2H2 Zn finger 199..219 CDD:275368 7/25 (28%)
C2H2 Zn finger 227..247 CDD:275368 10/19 (53%)
zf-H2C2_2 239..264 CDD:290200 15/24 (63%)
C2H2 Zn finger 255..275 CDD:275368 7/19 (37%)
C2H2 Zn finger 283..303 CDD:275368 10/19 (53%)
zf-H2C2_2 296..320 CDD:290200 11/23 (48%)
C2H2 Zn finger 311..331 CDD:275368 8/19 (42%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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