DRSC/TRiP Functional Genomics Resources

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Protein Alignment ranshi and trem

DIOPT Version :9

Sequence 1:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster
Sequence 2:NP_650861.1 Gene:trem / 42392 FlyBaseID:FBgn0038767 Length:439 Species:Drosophila melanogaster


Alignment Length:416 Identity:118/416 - (28%)
Similarity:174/416 - (41%) Gaps:88/416 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 VCRTCGKRTNAERSL--NIFEKRNQTTLEH-IKLLTGAVLKNCSTLPNRLCASCQTCLQQAISFR 66
            |||.|....:....|  :||.:...|.|:. :.:..|..:......|:::|:.|..||:....||
  Fly    11 VCRVCLNNPSEGEELLHDIFSETASTRLDQMLHICAGIPVSLDDNFPDKMCSKCVRCLRLCYKFR 75

  Fly    67 ERCLEVQRELLHSQDDE----------DFLRICQE-SPKSVLE-----------------QEELE 103
            ..|....:.::...|.|          |.|.|.:: |.:|||:                 :|:.:
  Fly    76 LTCQRSHQHIMDMLDREASNANAAGEGDLLSIAEDLSVESVLKSWEDYASQLDGGMKVEGEEDQQ 140

  Fly   104 LDLAEISIEVERLDDLN----EGPIQSSGFKVED------------ILNESK------------- 139
            ..:....:|....||.|    ..|.|....::|:            :.||:.             
  Fly   141 HQVITYVVEDGDTDDTNMFDVHDPTQPVPNEIEEAETYAEYEEYELLTNENSPEIAQEKGSTGTD 205

  Fly   140 -INEDEPNNE--DDIDYSEMDYLIYESDTEVDAKQELKSD----------SENPK----KRRNRR 187
             ..|:.|..|  :||..|:.||      ....||.| |.|          ..:||    |::..|
  Fly   206 VATEEPPEEEIAEDILDSDEDY------DPTHAKPE-KCDRSGRKPVAYHKNSPKVETFKKKVGR 263

  Fly   188 NPRDSNRTFFCEECGNHIKDRISFILHCKRHRGVKEFGCEFCEDRFCTPAELKRHIRKHTGEKPF 252
            .||:...|:.|:.|||....:.....|.|.|.|||...||.|...|....:|.||:..|||.:|:
  Fly   264 KPRNKLSTYICDVCGNIYPTQARLTEHMKFHSGVKPHECEICGRGFVQNQQLVRHMNTHTGNRPY 328

  Fly   253 KCRHCSRSFSDYSTRLKHERTHTNERPFVCKECNNAFTTSYILKNHMLVHTGEKAFRCDLCDKLF 317
            ||.:|..:|:|.||:.||.|.||.|||:||..|:..||.|..||.|.::|||||...||||.|.|
  Fly   329 KCNYCPAAFADRSTKTKHHRIHTKERPYVCDVCSRTFTYSDNLKFHKMIHTGEKPHVCDLCGKGF 393

  Fly   318 SR----YTHLTTHYRSNAHRRNMQKA 339
            .:    ..|..||.|....|.:.:::
  Fly   394 VKAYKLRLHRETHNRRITWRNDAEES 419

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ranshiNP_649824.1 zf-AD 5..77 CDD:214871 18/74 (24%)
C2H2 Zn finger 198..218 CDD:275368 6/19 (32%)
COG5048 222..>276 CDD:227381 23/53 (43%)
C2H2 Zn finger 226..246 CDD:275368 7/19 (37%)
zf-H2C2_2 238..262 CDD:290200 10/23 (43%)
C2H2 Zn finger 254..274 CDD:275368 9/19 (47%)
zf-H2C2_2 269..291 CDD:290200 12/21 (57%)
C2H2 Zn finger 282..302 CDD:275368 8/19 (42%)
zf-H2C2_2 295..319 CDD:290200 14/23 (61%)
C2H2 Zn finger 310..328 CDD:275368 9/21 (43%)
tremNP_650861.1 zf-AD 11..87 CDD:214871 18/75 (24%)
COG5048 <264..411 CDD:227381 63/146 (43%)
C2H2 Zn finger 274..294 CDD:275368 6/19 (32%)
zf-H2C2_2 287..311 CDD:290200 10/23 (43%)
C2H2 Zn finger 302..322 CDD:275368 7/19 (37%)
zf-H2C2_2 315..338 CDD:290200 10/22 (45%)
C2H2 Zn finger 330..350 CDD:275368 9/19 (47%)
zf-H2C2_2 345..367 CDD:290200 12/21 (57%)
C2H2 Zn finger 358..378 CDD:275368 8/19 (42%)
zf-H2C2_2 370..394 CDD:290200 13/23 (57%)
C2H2 Zn finger 386..406 CDD:275368 7/19 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 62 1.000 Inparanoid score I2531
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.960

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