DRSC/TRiP Functional Genomics Resources

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Protein Alignment ranshi and CG4424

DIOPT Version :9

Sequence 1:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster
Sequence 2:NP_650859.3 Gene:CG4424 / 42390 FlyBaseID:FBgn0038765 Length:345 Species:Drosophila melanogaster


Alignment Length:356 Identity:93/356 - (26%)
Similarity:156/356 - (43%) Gaps:70/356 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 VCRTCGKRTNAERSLNIFEKRNQ------TTLEHIKLLTGAVLKNCS---TLPNRLCASCQTCLQ 60
            :||||.:...| ..::||:..:.      :..:.|:.|:|..::..:   .||.|:|..|:..|.
  Fly    10 LCRTCLQDGEA-HMVSIFQTADDRLPGGVSLCDKIESLSGIQIRATAKEEVLPTRICLRCKAFLT 73

  Fly    61 QAISFRERCLEVQRELLHSQDDEDFLRICQESPKSVLEQEELELDLAEISIEVERLDDLNEGPIQ 125
            .|..||:.|          |...:|||            |.:..|..|..:              
  Fly    74 LAHKFRQIC----------QRSNEFLR------------EYVIKDAVEQGV-------------- 102

  Fly   126 SSGFKVEDILNESKINEDEPNNEDDIDYSEMDYL---IYESDTEVDAKQELKSDSENPKKRRNRR 187
                 |::::.:::.:...|...:.::..|.:.|   ::.::..::......::.|.|.......
  Fly   103 -----VKEVVQQTRPSTPPPIETEQLEPPEDEVLEEGVWSTEDPIEETPHGPAEKERPTVLTVEM 162

  Fly   188 NPRD----------------SNRTFFCEECGNHIKDRISFILHCKRHRGVKEFGCEFCEDRFCTP 236
            .|..                ..:...|..|||....:.:...|.:||...:.:.||.|...|...
  Fly   163 LPAPYPPPASTPPPAPAGAVKGKLHVCAICGNGYPRKSTLDTHMRRHNDERPYECEICHKSFHVN 227

  Fly   237 AELKRHIRKHTGEKPFKCRHCSRSFSDYSTRLKHERTHTNERPFVCKECNNAFTTSYILKNHMLV 301
            .:||||||:|||.||:.|::|.|:|:|.::.:||||||.||||:.||.|...||.:.:||.|...
  Fly   228 YQLKRHIRQHTGAKPYTCQYCQRNFADRTSLVKHERTHRNERPYACKTCGKKFTYASVLKMHYKT 292

  Fly   302 HTGEKAFRCDLCDKLFSRYTHLTTHYRSNAH 332
            |||||...|.||:|.|:|..:|..|.::..|
  Fly   293 HTGEKPHICQLCNKSFARIHNLVAHLQTQQH 323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ranshiNP_649824.1 zf-AD 5..77 CDD:214871 20/80 (25%)
C2H2 Zn finger 198..218 CDD:275368 5/19 (26%)
COG5048 222..>276 CDD:227381 26/53 (49%)
C2H2 Zn finger 226..246 CDD:275368 10/19 (53%)
zf-H2C2_2 238..262 CDD:290200 14/23 (61%)
C2H2 Zn finger 254..274 CDD:275368 9/19 (47%)
zf-H2C2_2 269..291 CDD:290200 14/21 (67%)
C2H2 Zn finger 282..302 CDD:275368 8/19 (42%)
zf-H2C2_2 295..319 CDD:290200 13/23 (57%)
C2H2 Zn finger 310..328 CDD:275368 8/17 (47%)
CG4424NP_650859.3 zf-AD 10..92 CDD:285071 24/104 (23%)
C2H2 Zn finger 189..209 CDD:275368 5/19 (26%)
DUF45 <204..281 CDD:302795 36/76 (47%)
COG5048 210..>345 CDD:227381 52/114 (46%)
C2H2 Zn finger 217..237 CDD:275368 10/19 (53%)
C2H2 Zn finger 245..265 CDD:275368 9/19 (47%)
zf-H2C2_2 257..282 CDD:290200 14/24 (58%)
C2H2 Zn finger 273..293 CDD:275368 8/19 (42%)
zf-H2C2_2 286..310 CDD:290200 13/23 (57%)
C2H2 Zn finger 301..320 CDD:275368 8/18 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 62 1.000 Inparanoid score I2531
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.960

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