DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ranshi and Odj

DIOPT Version :9

Sequence 1:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster
Sequence 2:NP_650661.1 Gene:Odj / 42145 FlyBaseID:FBgn0038551 Length:430 Species:Drosophila melanogaster


Alignment Length:371 Identity:108/371 - (29%)
Similarity:161/371 - (43%) Gaps:65/371 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 CRTCGKRTNAERSLNIFEKRNQTTLEHIKLLTG--AVLKNCSTLPNRLCASCQTCLQQAISFRER 68
            ||.||:|.......|||||||......|:.:||  .||:|  .||..:||.|...|.||::||:|
  Fly     5 CRICGERIFTPHPKNIFEKRNHRIRMAIEQITGLEIVLEN--MLPQHICACCLLDLTQAVAFRQR 67

  Fly    69 CLEVQRELLHSQDDEDFLRICQESPKSVLEQEELELDLAEISIEVERLDDLNEGPIQSSGFKVED 133
            |||.... ||.       ||..::..:.....|:...|::..::.|.|||..:         .||
  Fly    68 CLETHAN-LHQ-------RISSKAGVASKGSPEVSPVLSDPLLKREVLDDTVD---------TED 115

  Fly   134 ILNESKINEDEPNNEDDIDY--SEMDYLIYESDTEVDAKQE--------------------LKSD 176
              ::..:::|:...:||.|:  .|...|.|....::..:.:                    .|:|
  Fly   116 --DKELLDDDKDLMDDDKDFLEDEKPILRYPPAKKIRIEDQNFPNRQSPRVRVKRLRVPVVEKAD 178

  Fly   177 SENPKKRRNRRNPRD---------SNRTFFCEECGNHIKDRISFILHCKRHRGVKEFGCEFCEDR 232
            |..|..|.:.|.||.         |.:.:.|::||....|..:...|..||...| |.|:.|..:
  Fly   179 SPPPPPREHVRKPRKRRPKPKVDRSIKRYVCDQCGWSFNDHSNMKDHKLRHFEEK-FSCDECGRK 242

  Fly   233 FCTPAELKRHIR-KHTGEKPFKCRHCSRSFSDYSTRLKHER-THTNERPFVCKECNNAFTTSYIL 295
            |.|...|:.||| .|.||||:.|:.|...|::..:|.:||| .|.||....||.|...|.:.   
  Fly   243 FYTMPLLRLHIRVHHKGEKPYVCKFCGMGFANSPSRCRHERQMHANELVHPCKICGKRFNSE--- 304

  Fly   296 KNHMLVHTGEKAFR-----CDLCDKLFSRYTHLTTHYRSNAHRRNM 336
            |..:....|.|:.:     |..|:|.|.....|..||.:..||:.:
  Fly   305 KGRLKHEEGHKSDQPDVHICLTCNKEFKEAQFLHRHYSTKYHRKRV 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ranshiNP_649824.1 zf-AD 5..77 CDD:214871 32/72 (44%)
C2H2 Zn finger 198..218 CDD:275368 5/19 (26%)
COG5048 222..>276 CDD:227381 23/55 (42%)
C2H2 Zn finger 226..246 CDD:275368 8/20 (40%)
zf-H2C2_2 238..262 CDD:290200 11/24 (46%)
C2H2 Zn finger 254..274 CDD:275368 7/20 (35%)
zf-H2C2_2 269..291 CDD:290200 10/22 (45%)
C2H2 Zn finger 282..302 CDD:275368 5/19 (26%)
zf-H2C2_2 295..319 CDD:290200 7/28 (25%)
C2H2 Zn finger 310..328 CDD:275368 6/17 (35%)
OdjNP_650661.1 zf-AD 5..77 CDD:214871 33/74 (45%)
COG5048 <202..343 CDD:227381 47/144 (33%)
C2H2 Zn finger 209..229 CDD:275368 5/19 (26%)
C2H2 Zn finger 236..256 CDD:275368 8/19 (42%)
zf-H2C2_2 249..274 CDD:290200 12/24 (50%)
C2H2 Zn finger 265..283 CDD:275368 5/17 (29%)
C2H2 Zn finger 298..314 CDD:275368 2/18 (11%)
zf-C2H2_jaz 322..347 CDD:288983 7/24 (29%)
C2H2 Zn finger 324..343 CDD:275368 7/18 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 48 1.000 Domainoid score I19075
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 62 1.000 Inparanoid score I2531
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000724
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.960

Return to query results.
Submit another query.