DRSC/TRiP Functional Genomics Resources

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Protein Alignment ranshi and CG6689

DIOPT Version :9

Sequence 1:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster
Sequence 2:NP_650051.1 Gene:CG6689 / 41345 FlyBaseID:FBgn0037877 Length:613 Species:Drosophila melanogaster


Alignment Length:445 Identity:96/445 - (21%)
Similarity:171/445 - (38%) Gaps:112/445 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 CRTCGKRTNAE-RSLNIFEKRNQTTLEHIKLLTGAVLKNCSTLPNRLCASCQTCLQQAISFRERC 69
            ||||.....|: |:.::|:..|...|.||::::|..:.:....|..:|.:|::.|.|||.|||.|
  Fly   167 CRTCYNDFTADFRAKDLFDPANSVLLFHIEVISGVWISHKPDEPRLMCPACKSALDQAIDFREMC 231

  Fly    70 LEVQRELLHSQDDEDFLRICQESPKSVLEQEELELDLAEISIEVERLDDLNEGPIQSSGFKVEDI 134
            :..:.:|..::...|.::|..|:...:....:|..|..  :..||.::|.....::..... :|.
  Fly   232 ISTELKLSQAKPSTDEVQIEAENENPISSDHDLISDTE--NTNVEEIEDAGGDHVEDEATS-DDQ 293

  Fly   135 LNESKINE--DEPNNEDDI--------------DYSEMDYLIYESDTEVDAKQELKSDSENPKKR 183
            .::..::|  :.|..:|.:              .|:..:.........:.:|.:.|..:...:|.
  Fly   294 TSQEAVDEVAESPAAQDPLSVALGAKIFKELLDQYTGKEKARLRKGAPIASKPKAKEKAAGEQKP 358

  Fly   184 RNRRNPRDSNR--------------TFFCEECGNHIKD----RISFILHCK-------------- 216
            :...||:....              .|.|::||...:.    ||..:.|.:              
  Fly   359 KRSANPKTKEERNLIRRAQLRAKPPNFVCDQCGQAFRMSHNLRIHMLRHTRTKNYQCTECPKTFY 423

  Fly   217 -----------RHRGVKEFGCEFCEDRFCTPAE----------------LKR------------- 241
                       ||||...|.|.||.:.|..|..                :||             
  Fly   424 DAYMRNMHIRIRHRGETPFACGFCSETFAYPGARQKHESEVHNAAPRLIVKRINPKPMPKPRESV 488

  Fly   242 -------------------HIRKHTGEKPFKCRHCSRSFSDYSTRLKHERTHTNERPFVCKECNN 287
                               ||:.||....:||:.||:|:||.:...:||.|| .:||..|..|..
  Fly   489 RYQCKLCQKHYASKYALGWHIKSHTDANAYKCQRCSKSYSDPNKLKRHEMTH-EKRPLQCDVCLK 552

  Fly   288 AFTTSYILKNHMLVHTGEKAFRCDLCDKLFSRYTHLTTHYRSNAHRRNMQKADTI 342
            .|.....|:.|.|:||||:.:.|::|:..|....::.:|..|..|:.|.:|...:
  Fly   553 GFYQRTRLREHELIHTGERPYWCEVCNVNFRYKYNMKSHANSKMHQDNARKLGVV 607

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ranshiNP_649824.1 zf-AD 5..77 CDD:214871 23/71 (32%)
C2H2 Zn finger 198..218 CDD:275368 6/48 (13%)
COG5048 222..>276 CDD:227381 23/101 (23%)
C2H2 Zn finger 226..246 CDD:275368 9/67 (13%)
zf-H2C2_2 238..262 CDD:290200 11/71 (15%)
C2H2 Zn finger 254..274 CDD:275368 8/19 (42%)
zf-H2C2_2 269..291 CDD:290200 9/21 (43%)
C2H2 Zn finger 282..302 CDD:275368 6/19 (32%)
zf-H2C2_2 295..319 CDD:290200 10/23 (43%)
C2H2 Zn finger 310..328 CDD:275368 4/17 (24%)
CG6689NP_650051.1 THAP 2..96 CDD:283206
zf-AD 167..240 CDD:214871 24/72 (33%)
zf-C2H2 385..407 CDD:278523 6/21 (29%)
C2H2 Zn finger 387..407 CDD:275368 5/19 (26%)
zf-H2C2_2 399..422 CDD:290200 3/22 (14%)
C2H2 Zn finger 415..436 CDD:275368 0/20 (0%)
C2H2 Zn finger 444..460 CDD:275368 5/15 (33%)
C2H2 Zn finger 492..512 CDD:275368 2/19 (11%)
C2H2 Zn finger 520..540 CDD:275368 8/19 (42%)
C2H2 Zn finger 547..567 CDD:275368 6/19 (32%)
zf-met 574..597 CDD:289631 5/22 (23%)
C2H2 Zn finger 575..591 CDD:275368 3/15 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 62 1.000 Inparanoid score I2531
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000724
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.960

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