DRSC/TRiP Functional Genomics Resources

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Protein Alignment ranshi and CG7963

DIOPT Version :9

Sequence 1:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster
Sequence 2:NP_649798.3 Gene:CG7963 / 41001 FlyBaseID:FBgn0037584 Length:354 Species:Drosophila melanogaster


Alignment Length:368 Identity:88/368 - (23%)
Similarity:150/368 - (40%) Gaps:78/368 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 CRTCGKRTNAERSLNIFEKRNQTTLEHIKLLTGAVLKNCSTL--------PNRLCASCQTCLQQA 62
            ||.|.|:.  |..::|:|     .:|.:::....:|:.|..:        |..||..|...|..|
  Fly    10 CRVCLKQD--ELLVDIYE-----IVEEMQVDLCTLLETCGGIKVDRRDVQPMYLCQECTNELLIA 67

  Fly    63 ISFRERCLEVQRELLHSQDDEDFLRICQESPKSVLEQEELELDLAEISIEVERLDDLNEGPIQSS 127
            ..||:.|  |:.|.|.....|    |..::.:.:..:|.:.:|.::...::..::|....||..|
  Fly    68 AKFRKIC--VESEKLRDMAPE----INIDTAEPLASEEIIIIDPSDYIEQLSAVEDPENEPIGVS 126

  Fly   128 ---------GFKVEDILNESKINEDEPNNEDDIDYSEMDYLIYESDTEVDAKQELK--------- 174
                     ||::.::|.. .|.|                 ::.|.|.:|.::..:         
  Fly   127 RWNCQHCGAGFQLSEVLRR-HIQE-----------------VHASITIIDCRERRRIFTKLGCYQ 173

  Fly   175 ----SDSENPKKRR----------------NRRNPRDSNRTFFCEECGNHIKDRISFILHCKRHR 219
                |.::.||:..                :..........|.|::|....:...:..:|.:||:
  Fly   174 VHNCSYAKTPKRGHKCLECGKCLQSASSLASHIRLHTDEWPFTCDQCAKAFRTNGALEVHQRRHK 238

  Fly   220 GVKEFGCEFCEDRFCTPAELKRHI-RKHTGEKPFKCRHCSRSFSDYSTRLKHERTHTNERPFVCK 283
            .|.:..|..|...|...:.|:||| .:||.|:|..|....||||.......|.||:|.|||:.|:
  Fly   239 QVLQHKCLHCGRGFVESSNLRRHIVNRHTEERPHLCNVYQRSFSRVYMLELHLRTNTGERPYACQ 303

  Fly   284 ECNNAFTTSYILKNHMLVHTGEKAFRCDLCDKLFSRYTHLTTH 326
            ..:..|....:||.|..:||||:..||.:|:|.|:|...|..|
  Fly   304 HRDKRFAQLGVLKIHERIHTGERLHRCQVCEKPFTRAGQLRKH 346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ranshiNP_649824.1 zf-AD 5..77 CDD:214871 21/78 (27%)
C2H2 Zn finger 198..218 CDD:275368 3/19 (16%)
COG5048 222..>276 CDD:227381 19/54 (35%)
C2H2 Zn finger 226..246 CDD:275368 7/20 (35%)
zf-H2C2_2 238..262 CDD:290200 11/24 (46%)
C2H2 Zn finger 254..274 CDD:275368 7/19 (37%)
zf-H2C2_2 269..291 CDD:290200 9/21 (43%)
C2H2 Zn finger 282..302 CDD:275368 5/19 (26%)
zf-H2C2_2 295..319 CDD:290200 12/23 (52%)
C2H2 Zn finger 310..328 CDD:275368 7/17 (41%)
CG7963NP_649798.3 zf-AD 10..80 CDD:285071 21/78 (27%)
C2H2 Zn finger 159..179 CDD:275368 0/19 (0%)
COG5048 184..>250 CDD:227381 10/65 (15%)
C2H2 Zn finger 189..209 CDD:275368 0/19 (0%)
C2H2 Zn finger 217..237 CDD:275368 3/19 (16%)
C2H2 Zn finger 245..262 CDD:275368 5/16 (31%)
C2H2 Zn finger 274..294 CDD:275368 7/19 (37%)
C2H2 Zn finger 302..322 CDD:275368 5/19 (26%)
zf-H2C2_2 315..339 CDD:290200 12/23 (52%)
C2H2 Zn finger 330..350 CDD:275368 7/17 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
00.000

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